{ "type": "genome", "identifier": "GCF_024372745.1", "organism": "Methanocalculus taiwanensis", "title": "Methanocalculus taiwanensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Chung Hsing University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_024372745.1", "bioproject": "PRJNA224116", "biosample": "SAMN12512004", "wgs_master": "VOTZ00000000.1", "refseq_category": "reference genome", "taxid": "106207", "species_taxid": "106207", "organism_name": "Methanocalculus taiwanensis", "infraspecific_name": "strain=P2F9704a", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/22", "asm_name": "ASM2437274v1", "asm_submitter": "National Chung Hsing University", "gbrs_paired_asm": "GCA_024372745.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/372/745/GCF_024372745.1_ASM2437274v1", 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"sample_host_location": [ "Taiwan: an estuary in Erlin Shi" ], "sample_host_location_id": [], "data_size": "0.668 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2342634", "Number of Sequences": "69", "Longest Sequences (bp)": "210121", "N50 (bp)": "72685", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "50.4", "Number of CDSs": "2263", "Average Protein Length": "308.4", "Coding Ratio (%)": "89.4", "Number of rRNAs": "4", "Number of tRNAs": "43", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methanocalculus taiwanensis", "strain": "strain=P2F9704a", "accession": "GCA_024372745.1", "taxid": 106207, "species_taxid": 106207, "relation_to_type": "type", "validated": true, "ani": 100.0, 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"gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanocorpusculaceae;g__Methanocalculus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.38", "min_intra_species_ani": "99.38", "mean_intra_species_af": "0.75", "min_intra_species_af": "0.75", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.046, "cell_length": -0.046, "doubling_h": 0.967, "growth_tmp": 37.05, "optimum_tmp": 37.0, "optimum_ph": 6.7, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": null, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Methanocalculus", "taiwanensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }