{ "type": "genome", "identifier": "GCF_024390955.1", "organism": "Acinetobacter pittii", "title": "Acinetobacter pittii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Rochester Institute of Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_024390955.1", "bioproject": "PRJNA224116", "biosample": "SAMN28813301", "wgs_master": "JANFCX000000000.1", "refseq_category": "na", "taxid": "48296", "species_taxid": "48296", "organism_name": "Acinetobacter pittii", "infraspecific_name": "strain=CIP70.29", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/24", "asm_name": "ASM2439095v1", "asm_submitter": "Rochester Institute of Technology", "gbrs_paired_asm": "GCA_024390955.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/390/955/GCF_024390955.1_ASM2439095v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4023901", "genome_size_ungapped": "4023901", "gc_percent": "39.000000", "replicon_count": "0", "scaffold_count": "117", "contig_count": "117", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_024390955.1-RS_2024_08_19", "annotation_date": "2024-08-19", "total_gene_count": "3959", "protein_coding_gene_count": "3768", "non_coding_gene_count": "72", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-24", "dateModified": "2022-07-24", "datePublished": "2022-07-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter pittii" ], "sample_taxid": [ "48296" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Rochester" ], "sample_host_location_id": [], "data_size": "1.146 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4023901", "Number of Sequences": "117", "Longest Sequences (bp)": "358024", "N50 (bp)": "88970", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.9", "Number of CDSs": "3759", "Average Protein Length": "307.6", "Coding Ratio (%)": "86.2", "Number of rRNAs": "2", "Number of tRNAs": "65", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter pittii", "strain": "strain=CIP70.29", "accession": "GCA_024390955.1", "taxid": 48296, "species_taxid": 48296, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1291, "total_fragments": 1293, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter pittii", "strain": "strain=CIP 70.29", "accession": "GCA_000369045.1", "taxid": 48296, "species_taxid": 48296, "relation_to_type": "type", "validated": true, "ani": 97.1721, "matched_fragments": 1123, "total_fragments": 1293, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter pittii", "strain": "strain=FDAARGOS 1399", "accession": "GCA_019047205.1", "taxid": 48296, "species_taxid": 48296, "relation_to_type": "type", "validated": true, "ani": 97.067, "matched_fragments": 1160, "total_fragments": 1293, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter pittii", "strain": "strain=DSM 25618", "accession": "GCA_000836015.1", "taxid": 48296, "species_taxid": 48296, "relation_to_type": "type", "validated": true, "ani": 97.0616, "matched_fragments": 1155, "total_fragments": 1293, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter lactucae", 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Acinetobacter", "pittii" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }