{ "type": "genome", "identifier": "GCF_024436035.1", "organism": "Streptomyces humicola", "title": "Streptomyces humicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kasetsart University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_024436035.1", "bioproject": "PRJNA224116", "biosample": "SAMN29010614", "wgs_master": "JANFNG000000000.1", "refseq_category": "reference genome", "taxid": "2953240", "species_taxid": "2953240", "organism_name": "Streptomyces humicola", "infraspecific_name": "strain=RB6PN25", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/25", "asm_name": "ASM2443603v1", "asm_submitter": "Kasetsart University", "gbrs_paired_asm": "GCA_024436035.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/436/035/GCF_024436035.1_ASM2443603v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7069061", "genome_size_ungapped": "7069061", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "78", "contig_count": "78", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_024436035.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "6608", "protein_coding_gene_count": "6288", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-25", "dateModified": "2022-07-25", "datePublished": "2022-07-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces humicola" ], "sample_taxid": [ "2953240" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand" ], "sample_host_location_id": [], "data_size": "1.929 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 3.5, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7069061", "Number of Sequences": "78", "Longest Sequences (bp)": "727573", "N50 (bp)": "205003", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.9", "Number of CDSs": "6648", "Average Protein Length": "307.6", "Coding Ratio (%)": "86.8", "Number of rRNAs": "3", "Number of tRNAs": "66", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces parmotrematis", "strain": "strain=Ptm05", "accession": "GCA_019890615.1", "taxid": 2873249, "species_taxid": 2873249, "relation_to_type": "type", "validated": true, "ani": 82.3152, "matched_fragments": 1153, "total_fragments": 2320, "ani_threshold": 95, 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"organism_name": "Streptomyces roseifaciens", "strain": "strain=MBT76", "accession": "GCA_001445655.1", "taxid": 1488406, "species_taxid": 1488406, "relation_to_type": "type", "validated": true, "ani": 80.5163, "matched_fragments": 1004, "total_fragments": 2320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces klenkii", "strain": "strain=KCTC 29202", "accession": "GCA_003626645.1", "taxid": 1420899, "species_taxid": 1420899, "relation_to_type": "type", "validated": true, "ani": 80.5086, "matched_fragments": 963, "total_fragments": 2320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces mashuensis", "strain": "strain=JCM 4059", "accession": "GCA_014654785.1", "taxid": 33904, "species_taxid": 33904, "relation_to_type": "type", "validated": true, "ani": 80.4738, "matched_fragments": 927, "total_fragments": 2320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces abikoensis", "strain": "strain=JCM 4002", "accession": "GCA_014648775.1", "taxid": 97398, "species_taxid": 97398, "relation_to_type": "type", "validated": true, "ani": 80.4308, "matched_fragments": 974, "total_fragments": 2320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces hiroshimensis", "strain": "strain=JCM 4586", "accession": "GCA_014650335.1", "taxid": 66424, "species_taxid": 66424, "relation_to_type": "type", "validated": true, "ani": 80.4032, "matched_fragments": 966, "total_fragments": 2320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinacidiphila paucisporea", "strain": "strain=CGMCC 4.2025", "accession": "GCA_900142575.1", "taxid": 310782, "species_taxid": 310782, "relation_to_type": "type", "validated": true, "ani": 80.3826, "matched_fragments": 979, "total_fragments": 2320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces albospinus", "strain": "strain=JCM 3399", "accession": "GCA_014648695.1", "taxid": 285515, "species_taxid": 285515, "relation_to_type": "type", "validated": true, "ani": 80.3667, "matched_fragments": 1043, "total_fragments": 2320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinacidiphila guanduensis", "strain": "strain=CGMCC 4.2022", "accession": "GCA_900103985.1", "taxid": 310781, "species_taxid": 310781, "relation_to_type": "type", "validated": true, "ani": 80.3492, "matched_fragments": 983, "total_fragments": 2320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces hygroscopicus subsp. hygroscopicus", "strain": "strain=NBRC 13472", "accession": "GCA_001553455.1", "taxid": 68042, "species_taxid": 1912, "relation_to_type": "type", "validated": true, "ani": 80.2768, "matched_fragments": 954, "total_fragments": 2320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces monomycini", "strain": "strain=NRRL B-24309", "accession": "GCA_000715845.1", "taxid": 371720, "species_taxid": 371720, "relation_to_type": "type", "validated": true, "ani": 80.2107, "matched_fragments": 995, "total_fragments": 2320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinacidiphila rubida", "strain": "strain=CGMCC 4.2026", "accession": "GCA_900110255.1", "taxid": 310780, "species_taxid": 310780, "relation_to_type": "type", "validated": true, "ani": 80.1963, "matched_fragments": 1028, "total_fragments": 2320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseostramineus", "strain": "strain=CECT 3273", "accession": "GCA_014203535.1", "taxid": 66898, "species_taxid": 66898, "relation_to_type": "suspected-type", "validated": true, "ani": 80.1916, "matched_fragments": 957, "total_fragments": 2320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces kasugaensis", "strain": "strain=BCRC 12349", "accession": "GCA_002261115.1", "taxid": 1946, "species_taxid": 1946, "relation_to_type": "type", "validated": true, "ani": 80.1651, "matched_fragments": 1014, "total_fragments": 2320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces sennicomposti", "strain": "strain=RCPT1-4", "accession": "GCA_019890635.1", "taxid": 2873384, "species_taxid": 2873384, "relation_to_type": "type", "validated": true, "ani": 80.1572, "matched_fragments": 983, "total_fragments": 2320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces inhibens", "strain": "strain=NEAU-D10", "accession": "GCA_003389455.1", "taxid": 2293571, "species_taxid": 2293571, "relation_to_type": "type", "validated": true, "ani": 80.1569, "matched_fragments": 1021, "total_fragments": 2320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinacidiphila epipremni", "strain": "strain=PRB2-1", "accession": "GCA_012034175.1", "taxid": 2053013, "species_taxid": 2053013, "relation_to_type": "type", "validated": true, "ani": 80.1426, "matched_fragments": 1001, "total_fragments": 2320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces melanogenes", "strain": "strain=JCM 4398", "accession": "GCA_014649795.1", "taxid": 67326, "species_taxid": 67326, "relation_to_type": "type", "validated": true, "ani": 80.0744, "matched_fragments": 1027, "total_fragments": 2320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rapamycinicus", "strain": "strain=NRRL 5491", "accession": "GCA_024298965.1", "taxid": 1226757, "species_taxid": 1226757, "relation_to_type": "type", "validated": true, "ani": 80.0619, "matched_fragments": 1081, "total_fragments": 2320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces javensis", "strain": "strain=DSM 41764", "accession": "GCA_016103505.1", "taxid": 114698, "species_taxid": 114698, "relation_to_type": "type", "validated": true, "ani": 80.0482, "matched_fragments": 882, 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80.4777, "matched_fragments": 926, "total_fragments": 2320, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007595705.1", "gtdb_species": "s__Streptomyces sp007595705", "ani": 80.4729, "matched_fragments": 1002, "total_fragments": 2320, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000717345.1", "gtdb_species": "s__Streptomyces lydicus", "ani": 80.4519, "matched_fragments": 1054, 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