{ "type": "genome", "identifier": "GCF_024436055.1", "organism": "Streptantibioticus rubrisoli", "title": "Streptantibioticus rubrisoli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kasetsart University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_024436055.1", "bioproject": "PRJNA224116", "biosample": "SAMN29010933", "wgs_master": "JANFNH000000000.1", "refseq_category": "reference genome", "taxid": "1387313", "species_taxid": "1387313", "organism_name": "Streptantibioticus rubrisoli", "infraspecific_name": "strain=DSM 42083", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/25", "asm_name": "ASM2443605v1", "asm_submitter": "Kasetsart University", "gbrs_paired_asm": "GCA_024436055.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/436/055/GCF_024436055.1_ASM2443605v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7264851", "genome_size_ungapped": "7264851", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "104", "contig_count": "104", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_024436055.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "6624", "protein_coding_gene_count": "6361", "non_coding_gene_count": "77", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-25", "dateModified": "2022-07-25", "datePublished": "2022-07-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptantibioticus rubrisoli" ], "sample_taxid": [ "1387313" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.971 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7264851", "Number of Sequences": "104", "Longest Sequences (bp)": "672880", "N50 (bp)": "113642", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.4", "Number of CDSs": "6601", "Average Protein Length": "313.9", "Coding Ratio (%)": "85.6", "Number of rRNAs": "3", "Number of tRNAs": "81", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces rubrisoli", "strain": "strain=DSM 42083", "accession": "GCA_024436055.1", "taxid": 1387313, "species_taxid": 1387313, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2368, 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"status": "below_threshold" }, { "organism_name": "Actinacidiphila bryophytorum", "strain": "strain=DSM 42138", "accession": "GCA_017164735.1", "taxid": 1436133, "species_taxid": 1436133, "relation_to_type": "type", "validated": true, "ani": 80.9279, "matched_fragments": 900, "total_fragments": 2373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces angustmyceticus", "strain": "strain=NRRL B-2347", "accession": "GCA_002154415.1", "taxid": 285578, "species_taxid": 285578, "relation_to_type": "type", "validated": true, "ani": 80.9168, "matched_fragments": 933, "total_fragments": 2373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinacidiphila bryophytorum", "strain": "strain=DSM 42138", "accession": "GCA_016916835.1", "taxid": 1436133, "species_taxid": 1436133, "relation_to_type": "type", "validated": true, "ani": 80.8175, "matched_fragments": 1018, "total_fragments": 2373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces morookaense", "strain": "strain=JCM 4793", "accession": "GCA_014656115.1", "taxid": 1970, "species_taxid": 1970, "relation_to_type": "type", "validated": true, "ani": 80.8128, "matched_fragments": 1098, "total_fragments": 2373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces morookaense", "strain": "strain=DSM 40503", "accession": "GCA_013030945.1", "taxid": 1970, "species_taxid": 1970, "relation_to_type": "type", "validated": true, "ani": 80.7934, "matched_fragments": 1032, "total_fragments": 2373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces angustmyceticus", "strain": "strain=JCM 4053", "accession": "GCA_019933235.1", "taxid": 285578, "species_taxid": 285578, "relation_to_type": "type", "validated": true, "ani": 80.7652, "matched_fragments": 1127, "total_fragments": 2373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces mobaraensis", "strain": "strain=DSM 40847", "accession": "GCA_000342125.1", "taxid": 35621, "species_taxid": 35621, "relation_to_type": "type", "validated": true, "ani": 80.7241, "matched_fragments": 1013, "total_fragments": 2373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces mashuensis", "strain": "strain=JCM 4059", "accession": "GCA_014654785.1", "taxid": 33904, "species_taxid": 33904, "relation_to_type": "type", "validated": true, "ani": 80.7218, "matched_fragments": 1049, "total_fragments": 2373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces angustmyceticus", "strain": "strain=NBRC 3934", "accession": "GCA_009176265.1", "taxid": 285578, "species_taxid": 285578, "relation_to_type": "type", "validated": true, "ani": 80.7165, "matched_fragments": 1130, "total_fragments": 2373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces orinoci", "strain": "strain=NRRL B-3379", "accession": "GCA_003121295.1", "taxid": 67339, "species_taxid": 67339, "relation_to_type": "type", "validated": true, "ani": 80.6288, "matched_fragments": 1091, "total_fragments": 2373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces mobaraensis", "strain": "strain=DSM 40847", "accession": "GCA_017916255.1", "taxid": 35621, "species_taxid": 35621, "relation_to_type": "type", "validated": true, "ani": 80.6288, "matched_fragments": 1056, "total_fragments": 2373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces caniferus", "strain": "strain=NBRC 15389", "accession": "GCA_009811555.1", "taxid": 285557, "species_taxid": 285557, "relation_to_type": "type", "validated": true, "ani": 80.5762, "matched_fragments": 1127, "total_fragments": 2373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces thermodiastaticus", "strain": "strain=DSM 40573", "accession": "GCA_021394575.1", "taxid": 44061, "species_taxid": 44061, "relation_to_type": "type", "validated": true, "ani": 80.5455, "matched_fragments": 948, "total_fragments": 2373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinacidiphila paucisporea", "strain": "strain=CGMCC 4.2025", "accession": "GCA_900142575.1", "taxid": 310782, "species_taxid": 310782, "relation_to_type": "type", "validated": true, "ani": 80.5364, "matched_fragments": 1039, "total_fragments": 2373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces albireticuli", "strain": "strain=NRRL B1670", "accession": "GCA_021228125.1", "taxid": 1940, "species_taxid": 1940, "relation_to_type": "type", "validated": true, "ani": 80.45, "matched_fragments": 1073, "total_fragments": 2373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces sudanensis", "strain": "strain=SD 504", "accession": "GCA_023614315.1", "taxid": 436397, "species_taxid": 436397, "relation_to_type": 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79.7617, "matched_fragments": 1007, "total_fragments": 2373, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_003144095.1", "gtdb_species": "s__Streptomyces sp003144095", "ani": 83.4203, "matched_fragments": 1242, "total_fragments": 2373, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000240165.1", "gtdb_species": "s__Streptomyces cattleya", "ani": 83.0639, "matched_fragments": 1281, "total_fragments": 2373, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", 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