{ "type": "genome", "identifier": "GCF_024436395.1", "organism": "Paradesertivirga mongoliensis", "title": "Paradesertivirga mongoliensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sun Yat-Sen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_024436395.1", "bioproject": "PRJNA224116", "biosample": "SAMN18221272", "wgs_master": "JAFMZO000000000.1", "refseq_category": "reference genome", "taxid": "2100740", "species_taxid": "2100740", "organism_name": "Paradesertivirga mongoliensis", "infraspecific_name": "strain=KCTC 52859", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/25", "asm_name": "ASM2443639v1", "asm_submitter": "Sun Yat-Sen University", "gbrs_paired_asm": "GCA_024436395.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/436/395/GCF_024436395.1_ASM2443639v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4549596", "genome_size_ungapped": "4549500", "gc_percent": "42.500000", "replicon_count": "0", "scaffold_count": "8", "contig_count": "8", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_024436395.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "3911", "protein_coding_gene_count": "3860", "non_coding_gene_count": "45", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-25", "dateModified": "2022-07-25", "datePublished": "2022-07-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Paradesertivirga mongoliensis" ], "sample_taxid": [ "2100740" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Inner-Mongolia" ], "sample_host_location_id": [], "data_size": "1.296 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4549596", "Number of Sequences": "8", "Longest Sequences (bp)": "1371849", "N50 (bp)": "1210148", "Gap Ratio (%)": "0.002132", "GCcontent (%)": "42.5", "Number of CDSs": "3818", "Average Protein Length": "352.4", "Coding Ratio (%)": "88.7", "Number of rRNAs": "3", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pedobacter mongoliensis", "strain": "strain=KCTC 52859", "accession": "GCA_024436395.1", "taxid": 2100740, "species_taxid": 2100740, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter planticolens", "strain": "strain=LMG 31464", "accession": "GCA_014172375.1", "taxid": 2679964, "species_taxid": 2679964, "relation_to_type": "type", "validated": true, "ani": 77.2322, "matched_fragments": 56, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcticibacter pallidicorallinus", "strain": "strain=CGMCC 1.9313", "accession": "GCA_003002875.1", "taxid": 1259464, "species_taxid": 1259464, "relation_to_type": "type", "validated": true, "ani": 77.152, "matched_fragments": 90, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter agri", "strain": "strain=R11", "accession": "GCA_009928685.1", "taxid": 2695265, "species_taxid": 2695265, "relation_to_type": "type", "validated": true, "ani": 77.0316, "matched_fragments": 71, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gracilis", "strain": "strain=DSM 18602", "accession": "GCA_003633615.1", "taxid": 423350, "species_taxid": 423350, "relation_to_type": "type", "validated": true, "ani": 77.0256, "matched_fragments": 54, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter glucosidilyticus", "strain": "strain=DSM 23534", "accession": "GCA_000425145.1", "taxid": 1122941, "species_taxid": 1122941, "relation_to_type": "type", "validated": true, "ani": 76.9414, "matched_fragments": 67, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter corticis", "strain": "strain=MAH-19", "accession": "GCA_007558865.1", "taxid": 2597670, "species_taxid": 2597670, "relation_to_type": "type", "validated": true, "ani": 76.9198, "matched_fragments": 56, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter ureilyticus", "strain": "strain=THG-T11", "accession": "GCA_005925345.1", "taxid": 1393051, "species_taxid": 1393051, "relation_to_type": "type", "validated": true, "ani": 76.8858, "matched_fragments": 61, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter cryophilus", "strain": "strain=AR-3-17", "accession": "GCA_005116455.1", "taxid": 2571271, "species_taxid": 2571271, "relation_to_type": "type", "validated": true, "ani": 76.8787, "matched_fragments": 67, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter celer", "strain": "strain=HYN0043", "accession": "GCA_003576455.2", "taxid": 2305508, "species_taxid": 2305508, "relation_to_type": "type", "validated": true, "ani": 76.8697, "matched_fragments": 63, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter nototheniae", "strain": "strain=36B243", "accession": "GCA_004335085.1", "taxid": 2488994, "species_taxid": 2488994, "relation_to_type": "type", "validated": true, "ani": 76.8661, "matched_fragments": 69, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter foliorum", "strain": "strain=LMG 31463", "accession": "GCA_013266735.1", "taxid": 2739058, "species_taxid": 2739058, "relation_to_type": "type", "validated": true, "ani": 76.8569, "matched_fragments": 57, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pallidiroseus", "strain": "strain=dk17", "accession": "GCA_007846085.1", "taxid": 2599295, "species_taxid": 2599295, "relation_to_type": "type", "validated": true, "ani": 76.8368, "matched_fragments": 51, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelobium manganitolerans", "strain": "strain=YS-25", "accession": "GCA_003609575.1", "taxid": 1842495, "species_taxid": 1842495, "relation_to_type": "type", "validated": true, "ani": 76.8303, "matched_fragments": 54, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pararcticibacter amylolyticus", "strain": "strain=FJ4-8", "accession": "GCA_003130405.1", "taxid": 2173175, "species_taxid": 2173175, "relation_to_type": "type", "validated": true, "ani": 76.808, "matched_fragments": 98, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pineti", "strain": "strain=47C3B", "accession": "GCA_900101875.1", "taxid": 1391627, "species_taxid": 1391627, "relation_to_type": "type", "validated": true, "ani": 76.771, "matched_fragments": 66, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter yonginense", "strain": "strain=KCTC22721", "accession": "GCA_003173595.1", "taxid": 651869, "species_taxid": 651869, "relation_to_type": "type", "validated": true, "ani": 76.7262, "matched_fragments": 50, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter ghigonis", "strain": "strain=Marseille-Q2390", "accession": "GCA_903166585.1", "taxid": 2730403, "species_taxid": 2730403, "relation_to_type": "type", "validated": true, "ani": 76.7099, "matched_fragments": 79, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter conchicola", "strain": "strain=MYSH2", "accession": "GCA_003432115.1", "taxid": 2303333, "species_taxid": 2303333, "relation_to_type": "type", "validated": true, "ani": 76.6764, "matched_fragments": 50, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter agri", "strain": "strain=PB92", "accession": "GCA_000258495.1", "taxid": 454586, "species_taxid": 454586, "relation_to_type": "type", "validated": true, "ani": 76.6466, "matched_fragments": 62, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter phyllosphaerae", "strain": "strain=PP-F2FG21", "accession": "GCA_004378255.1", "taxid": 1812349, "species_taxid": 1812349, "relation_to_type": "type", "validated": true, "ani": 76.4218, "matched_fragments": 65, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter nyackensis", "strain": "strain=DSM 19625", "accession": "GCA_900176505.1", "taxid": 475255, "species_taxid": 475255, "relation_to_type": "type", "validated": true, "ani": 76.3775, "matched_fragments": 76, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter cryoconitis", "strain": "strain=DSM 14825", "accession": "GCA_003259615.1", "taxid": 188932, "species_taxid": 188932, "relation_to_type": "suspected-type", "validated": true, "ani": 76.2181, "matched_fragments": 57, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_014380615.1", "gtdb_species": "s__JACMJM01 sp014380615", "ani": 79.3764, "matched_fragments": 414, "total_fragments": 1514, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__JACMJM01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009834875.1", "gtdb_species": "s__HMF7647 sp009834875", "ani": 77.9178, "matched_fragments": 77, "total_fragments": 1514, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__HMF7647", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006716645.1", "gtdb_species": "s__Pararcticibacter tournemirensis", "ani": 77.702, "matched_fragments": 92, "total_fragments": 1514, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pararcticibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.22", "min_intra_species_ani": "96.45", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.83", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_017355855.1", "gtdb_species": "s__SYSU-D00535 sp017355855", "ani": 77.5242, "matched_fragments": 140, "total_fragments": 1514, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__SYSU-D00535", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": 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