{ "type": "genome", "identifier": "GCF_024449025.1", "organism": "Natronomonas aquatica", "title": "Natronomonas aquatica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Sevilla, Spain", "publication": [ {} ], "properties": { "assembly_accession": "GCF_024449025.1", "bioproject": "PRJNA224116", "biosample": "SAMN19487687", "wgs_master": "JAHLKM000000000.1", "refseq_category": "reference genome", "taxid": "2841590", "species_taxid": "2841590", "organism_name": "Natronomonas aquatica", "infraspecific_name": "strain=F2-12", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/26", "asm_name": "ASM2444902v1", "asm_submitter": "University of Sevilla, Spain", "gbrs_paired_asm": "GCA_024449025.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/449/025/GCF_024449025.1_ASM2444902v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "archaea", "genome_size": "3214353", "genome_size_ungapped": "3213887", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "82", "contig_count": "82", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-09", "total_gene_count": "3370", "protein_coding_gene_count": "3234", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-26", "dateModified": "2022-07-26", "datePublished": "2022-07-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Natronomonas aquatica" ], "sample_taxid": [ "2841590" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain: Isla Cristina, Huelva" ], "sample_host_location_id": [], "data_size": "0.896 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 94.15, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3214353", "Number of Sequences": "82", "Longest Sequences (bp)": "353266", "N50 (bp)": "84628", "Gap Ratio (%)": "0.014497", "GCcontent (%)": "62.7", "Number of CDSs": "3238", "Average Protein Length": "284.5", "Coding Ratio (%)": "86.0", "Number of rRNAs": "2", "Number of tRNAs": "46", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Natronomonas moolapensis", "strain": "strain=8.8.11", "accession": "GCA_000591055.1", "taxid": 416273, "species_taxid": 416273, "relation_to_type": "type", "validated": true, "ani": 80.6381, "matched_fragments": 488, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natronomonas salsuginis", "strain": "strain=F20-122", "accession": "GCA_005239135.1", "taxid": 2217661, "species_taxid": 2217661, "relation_to_type": "type", "validated": true, "ani": 80.1964, "matched_fragments": 475, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natronomonas salina", "strain": "strain=YPL13", "accession": "GCA_013391105.1", "taxid": 1710540, "species_taxid": 1710540, "relation_to_type": "type", "validated": true, "ani": 79.5417, "matched_fragments": 450, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natronomonas gomsonensis", "strain": "strain=KCTC 4088", "accession": "GCA_024300825.1", "taxid": 1046043, "species_taxid": 1046043, "relation_to_type": "type", "validated": true, "ani": 79.0677, "matched_fragments": 418, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natronomonas pharaonis", "strain": "strain=Gabara", "accession": "GCA_000026045.1", "taxid": 2257, "species_taxid": 2257, "relation_to_type": "type", "validated": true, "ani": 79.0221, "matched_fragments": 378, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natronomonas halophila", "strain": "strain=C90", "accession": "GCA_013391085.1", "taxid": 2747817, "species_taxid": 2747817, "relation_to_type": "type", "validated": true, "ani": 78.9339, "matched_fragments": 395, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomicroarcula rubra", "strain": "strain=F13", "accession": "GCA_019599465.1", "taxid": 2487747, "species_taxid": 2487747, "relation_to_type": "type", "validated": true, "ani": 77.2551, "matched_fragments": 276, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halorientalis pallida", "strain": "strain=F13-25", "accession": "GCA_004118325.1", "taxid": 2479928, "species_taxid": 2479928, "relation_to_type": "type", "validated": true, "ani": 77.0378, "matched_fragments": 300, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinigranum halophilum", "strain": "strain=YJ-53", "accession": "GCA_007004735.1", "taxid": 2565931, "species_taxid": 2565931, "relation_to_type": "type", "validated": true, "ani": 76.8442, "matched_fragments": 237, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 94.15, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000591055.1", "gtdb_species": "s__Natronomonas moolapensis", "ani": 80.6773, "matched_fragments": 485, "total_fragments": 1032, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Natronomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013839515.1", "gtdb_species": "s__Natronomonas sp013839515", "ani": 80.5566, "matched_fragments": 484, "total_fragments": 1032, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Natronomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005239135.1", "gtdb_species": "s__Natronomonas salsuginis", "ani": 80.1823, "matched_fragments": 477, "total_fragments": 1032, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Natronomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013391105.1", "gtdb_species": "s__Natronomonas salina", "ani": 79.5412, "matched_fragments": 450, "total_fragments": 1032, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Natronomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003023535.1", "gtdb_species": "s__Natronomonas sp003023535", "ani": 79.0574, "matched_fragments": 284, "total_fragments": 1032, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Natronomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003020965.1", "gtdb_species": "s__Natronomonas sp003020965", "ani": 79.0481, "matched_fragments": 402, "total_fragments": 1032, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Natronomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003022945.1", "gtdb_species": "s__Natronomonas sp003022945", "ani": 78.5787, "matched_fragments": 350, "total_fragments": 1032, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Natronomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007121575.1", "gtdb_species": "s__Natronomonas sp007121575", "ani": 78.3259, "matched_fragments": 200, "total_fragments": 1032, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Natronomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003021325.1", "gtdb_species": "s__Natronomonas sp003021325", "ani": 78.3055, "matched_fragments": 258, "total_fragments": 1032, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Natronomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.023, "cell_length": 0.161, "doubling_h": 0.704, "growth_tmp": 38.5, "optimum_tmp": 30.0, "optimum_ph": 7.875, "genome_size": 2831134.599, "gc_content": 62.746, "coding_genes": 2747.5, "rRNA16S_genes": 1.0, "tRNA_genes": 45.5, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Natronomonas", "aquatica" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }