{
    "type": "genome",
    "identifier": "GCF_024494695.1",
    "organism": "Natronoarchaeum rubrum",
    "title": "Natronoarchaeum rubrum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Jiangsu University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_024494695.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN29911666",
        "wgs_master": "JANHDP000000000.1",
        "refseq_category": "reference genome",
        "taxid": "755311",
        "species_taxid": "755311",
        "organism_name": "Natronoarchaeum rubrum",
        "infraspecific_name": "strain=GX48",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/07/30",
        "asm_name": "ASM2449469v1",
        "asm_submitter": "Jiangsu University",
        "gbrs_paired_asm": "GCA_024494695.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/494/695/GCF_024494695.1_ASM2449469v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "4032564",
        "genome_size_ungapped": "4032564",
        "gc_percent": "66.500000",
        "replicon_count": "0",
        "scaffold_count": "15",
        "contig_count": "15",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_024494695.1-RS_2024_09_19",
        "annotation_date": "2024-09-19",
        "total_gene_count": "4112",
        "protein_coding_gene_count": "4004",
        "non_coding_gene_count": "64",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-07-30",
    "dateModified": "2022-07-30",
    "datePublished": "2022-07-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Natronoarchaeum rubrum"
        ],
        "sample_taxid": [
            "755311"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Shandong, Gangxi"
        ],
        "sample_host_location_id": [],
        "data_size": "1.095 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 17.05,
        "strain_heterogeneity": 85.71,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4032564",
        "Number of Sequences": "15",
        "Longest Sequences (bp)": "816841",
        "N50 (bp)": "590906",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "66.4",
        "Number of CDSs": "4024",
        "Average Protein Length": "290.5",
        "Coding Ratio (%)": "87.0",
        "Number of rRNAs": "6",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Natronoarchaeum rubrum",
                "strain": "strain=GX48",
                "accession": "GCA_024494695.1",
                "taxid": 755311,
                "species_taxid": 755311,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1278,
                "total_fragments": 1337,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Natronoarchaeum philippinense",
                "strain": "strain=DSM 27208",
                "accession": "GCA_900215575.1",
                "taxid": 558529,
                "species_taxid": 558529,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.9472,
                "matched_fragments": 838,
                "total_fragments": 1337,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halostella litorea",
                "strain": "strain=DLLS-108",
                "accession": "GCA_004785955.1",
                "taxid": 2528831,
                "species_taxid": 2528831,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7065,
                "matched_fragments": 598,
                "total_fragments": 1337,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halostella limicola",
                "strain": "strain=LT12",
                "accession": "GCA_003675875.1",
                "taxid": 2448456,
                "species_taxid": 2448456,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6801,
                "matched_fragments": 604,
                "total_fragments": 1337,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natranaeroarchaeum aerophilus",
                "strain": "strain=AArc-St1-1",
                "accession": "GCA_023638055.1",
                "taxid": 2917711,
                "species_taxid": 2917711,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2557,
                "matched_fragments": 463,
                "total_fragments": 1337,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natranaeroarchaeum sulfidigenes",
                "strain": "strain=AArc-S",
                "accession": "GCA_017094485.1",
                "taxid": 2784880,
                "species_taxid": 2784880,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1573,
                "matched_fragments": 432,
                "total_fragments": 1337,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halorussus rarus",
                "strain": "strain=TBN4",
                "accession": "GCA_003369835.1",
                "taxid": 660515,
                "species_taxid": 660515,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5272,
                "matched_fragments": 557,
                "total_fragments": 1337,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 17.05,
            "strain_heterogeneity": 85.71
        },
        "gtdb_result": [
            {
                "accession": "GCF_900215575.1",
                "gtdb_species": "s__Natronoarchaeum philippinense",
                "ani": 85.9334,
                "matched_fragments": 839,
                "total_fragments": 1337,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natronoarchaeaceae;g__Natronoarchaeum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003675855.1",
                "gtdb_species": "s__Halostella salina",
                "ani": 79.8233,
                "matched_fragments": 577,
                "total_fragments": 1337,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__QS-9-68-17;g__Halostella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003675875.1",
                "gtdb_species": "s__Halostella sp003675875",
                "ani": 79.7014,
                "matched_fragments": 604,
                "total_fragments": 1337,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__QS-9-68-17;g__Halostella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_004785955.1",
                "gtdb_species": "s__Halostella litorea",
                "ani": 79.6901,
                "matched_fragments": 597,
                "total_fragments": 1337,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__QS-9-68-17;g__Halostella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003023565.1",
                "gtdb_species": "s__Halostella sp003023565",
                "ani": 79.2723,
                "matched_fragments": 478,
                "total_fragments": 1337,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__QS-9-68-17;g__Halostella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017094485.1",
                "gtdb_species": "s__Natronoarchaeum sp017094485",
                "ani": 79.1393,
                "matched_fragments": 436,
                "total_fragments": 1337,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natronoarchaeaceae;g__Natronoarchaeum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003369835.1",
                "gtdb_species": "s__Halorussus rarus",
                "ani": 78.5153,
                "matched_fragments": 558,
                "total_fragments": 1337,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haladaptataceae;g__Halorussus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_004765795.1",
                "gtdb_species": "s__Halorussus sp004765795",
                "ani": 78.4587,
                "matched_fragments": 491,
                "total_fragments": 1337,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haladaptataceae;g__Halorussus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.88",
                "min_intra_species_ani": "98.88",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900110865.1",
                "gtdb_species": "s__Natrinema salaciae",
                "ani": 78.1906,
                "matched_fragments": 511,
                "total_fragments": 1337,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natrinema",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004765805.1",
                "gtdb_species": "s__Halorussus sp004765805",
                "ani": 78.0852,
                "matched_fragments": 461,
                "total_fragments": 1337,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haladaptataceae;g__Halorussus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.078,
        "cell_length": 0.352,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": 38.0,
        "optimum_ph": 8.0,
        "genome_size": 3164179.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Natronoarchaeum",
        "rubrum"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}