{
    "type": "genome",
    "identifier": "GCF_024495425.1",
    "organism": "Haloarchaeobius litoreus",
    "title": "Haloarchaeobius litoreus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Jiangsu University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_024495425.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN29862086",
        "wgs_master": "JANHJR000000000.1",
        "refseq_category": "reference genome",
        "taxid": "755306",
        "species_taxid": "755306",
        "organism_name": "Haloarchaeobius litoreus",
        "infraspecific_name": "strain=GX1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/07/30",
        "asm_name": "ASM2449542v1",
        "asm_submitter": "Jiangsu University",
        "gbrs_paired_asm": "GCA_024495425.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/495/425/GCF_024495425.1_ASM2449542v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "4049318",
        "genome_size_ungapped": "4049318",
        "gc_percent": "67.000000",
        "replicon_count": "0",
        "scaffold_count": "7",
        "contig_count": "7",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_024495425.1-RS_2024_07_29",
        "annotation_date": "2024-07-29",
        "total_gene_count": "4116",
        "protein_coding_gene_count": "4015",
        "non_coding_gene_count": "55",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-07-30",
    "dateModified": "2022-07-30",
    "datePublished": "2022-07-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Haloarchaeobius litoreus"
        ],
        "sample_taxid": [
            "755306"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Shandong"
        ],
        "sample_host_location_id": [],
        "data_size": "1.095 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 4.55,
        "strain_heterogeneity": 50.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4049318",
        "Number of Sequences": "7",
        "Longest Sequences (bp)": "1309105",
        "N50 (bp)": "1102851",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "67.2",
        "Number of CDSs": "4064",
        "Average Protein Length": "294.0",
        "Coding Ratio (%)": "88.5",
        "Number of rRNAs": "4",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "validated": true,
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                "ani_threshold": 95,
                "status": "conclusive"
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            {
                "organism_name": "Haloarchaeobius salinus",
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                "species_taxid": 1198298,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1060,
                "total_fragments": 1347,
                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Halostella limicola",
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                "species_taxid": 2448456,
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                "status": "below_threshold"
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            {
                "organism_name": "Halorussus litoreus",
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                "species_taxid": 1710536,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomicroarcula salina",
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                "accession": "GCA_019061225.1",
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                "matched_fragments": 482,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natronoarchaeum rubrum",
                "strain": "strain=GX48",
                "accession": "GCA_024494695.1",
                "taxid": 755311,
                "species_taxid": 755311,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3433,
                "matched_fragments": 476,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloterrigena alkaliphila",
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                "accession": "GCA_017352155.2",
                "taxid": 2816475,
                "species_taxid": 2816475,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
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                "organism_name": "Natronomonas salina",
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                "accession": "GCA_013391105.1",
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                "ani_threshold": 95,
                "status": "below_threshold"
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                "species_taxid": 148449,
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                "validated": true,
                "ani": 78.1586,
                "matched_fragments": 457,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halopiger xanaduensis",
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                "species_taxid": 387343,
                "relation_to_type": "type",
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                "ani": 78.133,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halorussus halobius",
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                "accession": "GCF_900103505.1",
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}