{
    "type": "genome",
    "identifier": "GCF_024498175.1",
    "organism": "Haloplanus salinarum",
    "title": "Haloplanus salinarum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Jiangsu University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_024498175.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN29883561",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1912324",
        "species_taxid": "1912324",
        "organism_name": "Haloplanus salinarum",
        "infraspecific_name": "strain=JCM 31424",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/08/01",
        "asm_name": "ASM2449817v1",
        "asm_submitter": "Jiangsu University",
        "gbrs_paired_asm": "GCA_024498175.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/498/175/GCF_024498175.1_ASM2449817v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "3450905",
        "genome_size_ungapped": "3450905",
        "gc_percent": "67.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_024498175.1-RS_2024_05_06",
        "annotation_date": "2024-05-06",
        "total_gene_count": "3634",
        "protein_coding_gene_count": "3510",
        "non_coding_gene_count": "56",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-08-01",
    "dateModified": "2022-08-01",
    "datePublished": "2022-08-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Haloplanus salinarum"
        ],
        "sample_taxid": [
            "1912324"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
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        ],
        "sample_host_location_id": [],
        "data_size": "0.934 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
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        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
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        "Total Sequence Length (bp)": "3450905",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3450905",
        "N50 (bp)": "3450905",
        "Gap Ratio (%)": "0.000000",
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        "Number of CDSs": "3568",
        "Average Protein Length": "284.6",
        "Coding Ratio (%)": "88.3",
        "Number of rRNAs": "6",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Haloplanus ruber",
                "strain": "strain=R35",
                "accession": "GCA_024494725.1",
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                "species_taxid": 869892,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloplanus rubicundus",
                "strain": "strain=CBA1112",
                "accession": "GCA_003342675.1",
                "taxid": 1547898,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 84.559,
                "matched_fragments": 782,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloplanus salinus",
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                "accession": "GCA_003336245.1",
                "taxid": 1126245,
                "species_taxid": 1126245,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "accession": "GCA_000427685.1",
                "taxid": 376171,
                "species_taxid": 376171,
                "relation_to_type": "type",
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                "ani": 84.1505,
                "matched_fragments": 735,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloplanus aerogenes",
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                "accession": "GCA_003688715.1",
                "taxid": 660522,
                "species_taxid": 660522,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.8531,
                "matched_fragments": 718,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloplanus aerogenes",
                "strain": "strain=JCM 16430",
                "accession": "GCA_003856835.1",
                "taxid": 660522,
                "species_taxid": 660522,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 726,
                "total_fragments": 1150,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloplanus vescus",
                "strain": "strain=CGMCC 1.8712",
                "accession": "GCA_900107665.1",
                "taxid": 555874,
                "species_taxid": 555874,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.95,
                "matched_fragments": 614,
                "total_fragments": 1150,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 4.17,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_009762275.1",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloplanus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
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                "accession": "GCF_003342675.1",
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                "mean_intra_species_ani": "98.71",
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            {
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_000427685.1",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloplanus",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloplanus",
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                "mean_intra_species_ani": "100.00",
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                "num_clustered_genomes": 2,
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            {
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloplanus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.1,
        "cell_length": 0.247,
        "doubling_h": null,
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        "sporulation": null,
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        "range_salinity": null,
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        "mesophilic_range_tmp": null,
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        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
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        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
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    "_genome_taxon": [
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        "salinarum"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}