{ "type": "genome", "identifier": "GCF_024498195.1", "organism": "Halovivax cerinus", "title": "Halovivax cerinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Jiangsu University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_024498195.1", "bioproject": "PRJNA224116", "biosample": "SAMN29883696", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1487865", "species_taxid": "1487865", "organism_name": "Halovivax cerinus", "infraspecific_name": "strain=IBRC-M 10256", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/01", "asm_name": "ASM2449819v1", "asm_submitter": "Jiangsu University", "gbrs_paired_asm": "GCA_024498195.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/498/195/GCF_024498195.1_ASM2449819v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "archaea", "genome_size": "3902757", "genome_size_ungapped": "3902757", "gc_percent": "65.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_024498195.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "3697", "protein_coding_gene_count": "3602", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-01", "dateModified": "2022-08-01", "datePublished": "2022-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Halovivax cerinus" ], "sample_taxid": [ "1487865" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Iran: Aran-Bidgol" ], "sample_host_location_id": [], "data_size": "1.064 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3902757", "Number of Sequences": "1", "Longest Sequences (bp)": "3902757", "N50 (bp)": "3902757", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.0", "Number of CDSs": "3629", "Average Protein Length": "301.0", "Coding Ratio (%)": "84.0", "Number of rRNAs": "3", "Number of tRNAs": "45", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halovivax cerinus", "strain": "strain=IBRC-M 10256", "accession": "GCA_024498195.1", "taxid": 1487865, "species_taxid": 1487865, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1300, "total_fragments": 1300, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Halovivax ruber", "strain": "strain=XH-70", "accession": "GCA_000328525.1", "taxid": 387341, "species_taxid": 387341, "relation_to_type": "type", "validated": true, "ani": 84.2856, "matched_fragments": 795, "total_fragments": 1300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halovivax asiaticus", "strain": "strain=JCM 14624", "accession": "GCA_000337515.1", "taxid": 332953, "species_taxid": 332953, "relation_to_type": "type", "validated": true, "ani": 84.1512, "matched_fragments": 776, "total_fragments": 1300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halovivax limisalsi", "strain": "strain=IBRC-M 10022", "accession": "GCA_023093535.1", "taxid": 1453760, "species_taxid": 1453760, "relation_to_type": "type", "validated": true, "ani": 81.6876, "matched_fragments": 725, "total_fragments": 1300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloterrigena 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