{
    "type": "genome",
    "identifier": "GCF_024505145.1",
    "organism": "Streptomyces rugosispiralis",
    "title": "Streptomyces rugosispiralis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Chulalongkorn university",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_024505145.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN29857578",
        "wgs_master": "JANIAA000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2967341",
        "species_taxid": "2967341",
        "organism_name": "Streptomyces rugosispiralis",
        "infraspecific_name": "strain=RCU-064",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/08/01",
        "asm_name": "ASM2450514v1",
        "asm_submitter": "Chulalongkorn university",
        "gbrs_paired_asm": "GCA_024505145.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/505/145/GCF_024505145.1_ASM2450514v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "11017810",
        "genome_size_ungapped": "11017810",
        "gc_percent": "71.500000",
        "replicon_count": "0",
        "scaffold_count": "298",
        "contig_count": "298",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_024505145.1-RS_2024_10_11",
        "annotation_date": "2024-10-11",
        "total_gene_count": "9499",
        "protein_coding_gene_count": "9125",
        "non_coding_gene_count": "72",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-08-01",
    "dateModified": "2022-08-01",
    "datePublished": "2022-08-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptomyces rugosispiralis"
        ],
        "sample_taxid": [
            "2967341"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Thailand:Nong Jum Rung"
        ],
        "sample_host_location_id": [],
        "data_size": "2.964 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 5.21,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "11017810",
        "Number of Sequences": "298",
        "Longest Sequences (bp)": "938018",
        "N50 (bp)": "183891",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "71.3",
        "Number of CDSs": "9269",
        "Average Protein Length": "333.2",
        "Coding Ratio (%)": "84.1",
        "Number of rRNAs": "3",
        "Number of tRNAs": "93",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Streptomyces iranensis",
                "strain": "strain=DSM 41954",
                "accession": "GCA_017874715.1",
                "taxid": 576784,
                "species_taxid": 576784,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.5221,
                "matched_fragments": 2801,
                "total_fragments": 3563,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces rapamycinicus",
                "strain": "strain=NRRL 5491",
                "accession": "GCA_003675955.1",
                "taxid": 1226757,
                "species_taxid": 1226757,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.516,
                "matched_fragments": 2911,
                "total_fragments": 3563,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces rapamycinicus",
                "strain": "strain=NRRL 5491",
                "accession": "GCA_024298965.1",
                "taxid": 1226757,
                "species_taxid": 1226757,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.4949,
                "matched_fragments": 2910,
                "total_fragments": 3563,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces rapamycinicus",
                "strain": "strain=DSM 41530",
                "accession": "GCA_014205315.1",
                "taxid": 1226757,
                "species_taxid": 1226757,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.4497,
                "matched_fragments": 2903,
                "total_fragments": 3563,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces rapamycinicus",
                "strain": "strain=NRRL 5491",
                "accession": "GCA_000418455.1",
                "taxid": 1226757,
                "species_taxid": 1226757,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.4466,
                "matched_fragments": 2907,
                "total_fragments": 3563,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces javensis",
                "strain": "strain=DSM 41764",
                "accession": "GCA_016103505.1",
                "taxid": 114698,
                "species_taxid": 114698,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.4051,
                "matched_fragments": 2208,
                "total_fragments": 3563,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces sabulosicollis",
                "strain": "strain=PRKS01-29",
                "accession": "GCA_016103465.1",
                "taxid": 2715963,
                "species_taxid": 2715963,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.8521,
                "matched_fragments": 2244,
                "total_fragments": 3563,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces yatensis",
                "strain": "strain=DSM 41771",
                "accession": "GCA_018069625.1",
                "taxid": 155177,
                "species_taxid": 155177,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.1973,
                "matched_fragments": 2760,
                "total_fragments": 3563,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces antimycoticus",
                "strain": "strain=NBRC 12839",
                "accession": "GCA_005405925.1",
                "taxid": 68175,
                "species_taxid": 68175,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.0212,
                "matched_fragments": 2770,
                "total_fragments": 3563,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces hygroscopicus subsp. hygroscopicus",
                "strain": "strain=NBRC 13472",
                "accession": "GCA_001553455.1",
                "taxid": 68042,
                "species_taxid": 1912,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.4727,
                "matched_fragments": 2114,
                "total_fragments": 3563,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces milbemycinicus",
                "strain": "strain=NRRL 5739",
                "accession": "GCA_002154605.1",
                "taxid": 476552,
                "species_taxid": 476552,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.2123,
                "matched_fragments": 1855,
                "total_fragments": 3563,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces pactum",
                "strain": "strain=ATCC 27456",
                "accession": "GCA_016031615.1",
                "taxid": 68249,
                "species_taxid": 68249,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.6094,
                "matched_fragments": 1512,
                "total_fragments": 3563,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces paromomycinus",
                "strain": "strain=NBRC 15454",
                "accession": "GCA_003865155.1",
                "taxid": 92743,
                "species_taxid": 92743,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0517,
                "matched_fragments": 1530,
                "total_fragments": 3563,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces albireticuli",
                "strain": "strain=NRRL B1670",
                "accession": "GCA_021228125.1",
                "taxid": 1940,
                "species_taxid": 1940,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0236,
                "matched_fragments": 1440,
                "total_fragments": 3563,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces rimosus subsp. rimosus",
                "strain": "strain=R7",
                "accession": "GCA_022760195.1",
                "taxid": 132474,
                "species_taxid": 1927,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9585,
                "matched_fragments": 1571,
                "total_fragments": 3563,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces monomycini",
                "strain": "strain=NRRL B-24309",
                "accession": "GCA_022271435.1",
                "taxid": 371720,
                "species_taxid": 371720,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9097,
                "matched_fragments": 1478,
                "total_fragments": 3563,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 5.21,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_016741935.1",
                "gtdb_species": "s__Streptomyces sp016741935",
                "ani": 94.8838,
                "matched_fragments": 3073,
                "total_fragments": 3563,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0488,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018138715.1",
                "gtdb_species": "s__Streptomyces asiaticus",
                "ani": 94.6776,
                "matched_fragments": 2903,
                "total_fragments": 3563,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.17",
                "min_intra_species_ani": "95.36",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCF_017874715.1",
                "gtdb_species": "s__Streptomyces iranensis",
                "ani": 94.5742,
                "matched_fragments": 2794,
                "total_fragments": 3563,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.67,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_005405945.1",
                "gtdb_species": "s__Streptomyces violaceusniger",
                "ani": 94.5255,
                "matched_fragments": 2829,
                "total_fragments": 3563,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.67",
                "min_intra_species_ani": "97.67",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003675955.1",
                "gtdb_species": "s__Streptomyces rapamycinicus",
                "ani": 94.5193,
                "matched_fragments": 2910,
                "total_fragments": 3563,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.67,
                "mean_intra_species_ani": "99.95",
                "min_intra_species_ani": "99.91",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000968685.2",
                "gtdb_species": "s__Streptomyces antioxidans",
                "ani": 93.4413,
                "matched_fragments": 2363,
                "total_fragments": 3563,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_015689475.1",
                "gtdb_species": "s__Streptomyces solisilvae",
                "ani": 92.2055,
                "matched_fragments": 2781,
                "total_fragments": 3563,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.71",
                "min_intra_species_ani": "97.94",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCF_018069625.1",
                "gtdb_species": "s__Streptomyces yatensis",
                "ani": 92.1944,
                "matched_fragments": 2760,
                "total_fragments": 3563,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 96.0185,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000147815.2",
                "gtdb_species": "s__Streptomyces violaceusniger_A",
                "ani": 91.984,
                "matched_fragments": 2708,
                "total_fragments": 3563,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.3301,
                "mean_intra_species_ani": "95.69",
                "min_intra_species_ani": "95.54",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_001553455.1",
                "gtdb_species": "s__Streptomyces hygroscopicus",
                "ani": 90.4642,
                "matched_fragments": 2115,
                "total_fragments": 3563,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.24",
                "min_intra_species_ani": "98.00",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 7,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.201,
        "cell_length": -0.05,
        "doubling_h": 0.103,
        "growth_tmp": 27.757,
        "optimum_tmp": 29.036,
        "optimum_ph": 7.341,
        "genome_size": 8292419.302,
        "gc_content": 71.543,
        "coding_genes": 7141.289,
        "rRNA16S_genes": 6.155,
        "tRNA_genes": 67.804,
        "gram_stain": 0.998,
        "sporulation": 0.958,
        "motility": 0.049,
        "range_salinity": 0.666,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.005,
        "aerobic_respiration": 0.994,
        "mesophilic_range_tmp": 0.98,
        "thermophilic_range_tmp": 0.019,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.208,
        "coccus_cell_shape": 0.032,
        "filament_cell_shape": 0.582,
        "coccobacillus_cell_shape": 0.098,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.076
    },
    "_genome_taxon": [
        "Streptomyces",
        "rugosispiralis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}