{
    "type": "genome",
    "identifier": "GCF_024529955.1",
    "organism": "Photobacterium toruni",
    "title": "Photobacterium toruni",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_024529955.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00393680",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1935446",
        "species_taxid": "1935446",
        "organism_name": "Photobacterium toruni",
        "infraspecific_name": "strain=CECT 9189",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/07/13",
        "asm_name": "ASM2452995v1",
        "asm_submitter": "Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University",
        "gbrs_paired_asm": "GCA_024529955.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/529/955/GCF_024529955.1_ASM2452995v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4499923",
        "genome_size_ungapped": "4499923",
        "gc_percent": "39.000000",
        "replicon_count": "7",
        "scaffold_count": "7",
        "contig_count": "7",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_024529955.1-RS_2024_10_12",
        "annotation_date": "2024-10-12",
        "total_gene_count": "4177",
        "protein_coding_gene_count": "3847",
        "non_coding_gene_count": "284",
        "pubmed_id": "34905112"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-07-13",
    "dateModified": "2022-07-13",
    "datePublished": "2022-07-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Photobacterium toruni"
        ],
        "sample_taxid": [
            "1935446"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Spain:Southern Atlantic coast"
        ],
        "sample_host_location_id": [],
        "data_size": "1.255 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4499923",
        "Number of Sequences": "7",
        "Longest Sequences (bp)": "3009243",
        "N50 (bp)": "3009243",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "38.8",
        "Number of CDSs": "3953",
        "Average Protein Length": "315.3",
        "Coding Ratio (%)": "83.1",
        "Number of rRNAs": "53",
        "Number of tRNAs": "223",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Photobacterium toruni",
                "strain": "strain=CECT 9189",
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                "species_taxid": 1935446,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1492,
                "total_fragments": 1497,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Photobacterium toruni",
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                "species_taxid": 1935446,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9404,
                "matched_fragments": 1421,
                "total_fragments": 1497,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Photobacterium piscicola",
                "strain": "strain=type strain: NCCB 100098",
                "accession": "GCA_900166965.1",
                "taxid": 1378299,
                "species_taxid": 1378299,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.9786,
                "matched_fragments": 1149,
                "total_fragments": 1497,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium carnosum",
                "strain": "strain=TMW 2.2021",
                "accession": "GCA_002849605.1",
                "taxid": 2023717,
                "species_taxid": 2023717,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.9383,
                "matched_fragments": 1131,
                "total_fragments": 1497,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium iliopiscarium",
                "strain": "strain=ATCC 51760",
                "accession": "GCA_000950265.1",
                "taxid": 56192,
                "species_taxid": 56192,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.3264,
                "matched_fragments": 1136,
                "total_fragments": 1497,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium iliopiscarium",
                "strain": "strain=ATCC 51760",
                "accession": "GCA_003026395.1",
                "taxid": 56192,
                "species_taxid": 56192,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.3158,
                "matched_fragments": 1162,
                "total_fragments": 1497,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium phosphoreum",
                "strain": "strain=JCM 21184",
                "accession": "GCA_002954725.1",
                "taxid": 659,
                "species_taxid": 659,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.1508,
                "matched_fragments": 1115,
                "total_fragments": 1497,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium phosphoreum",
                "strain": "strain=ATCC 11040",
                "accession": "GCA_000949955.1",
                "taxid": 659,
                "species_taxid": 659,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.1339,
                "matched_fragments": 1079,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium phosphoreum",
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                "accession": "GCA_003026275.1",
                "taxid": 659,
                "species_taxid": 659,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.1321,
                "matched_fragments": 1101,
                "total_fragments": 1497,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium aquimaris",
                "strain": "strain=DSM 23343",
                "accession": "GCA_003025415.1",
                "taxid": 512643,
                "species_taxid": 512643,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 85.7613,
                "matched_fragments": 1053,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium aquimaris",
                "strain": "strain=GCSL-P109",
                "accession": "GCA_001676085.1",
                "taxid": 512643,
                "species_taxid": 512643,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 85.7106,
                "matched_fragments": 1056,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium sanguinicancri",
                "strain": "strain=CECT 7579",
                "accession": "GCA_024346675.1",
                "taxid": 875932,
                "species_taxid": 875932,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0248,
                "matched_fragments": 370,
                "total_fragments": 1497,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio nitrifigilis",
                "strain": "strain=NFV-1",
                "accession": "GCA_015686695.1",
                "taxid": 2789781,
                "species_taxid": 2789781,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5039,
                "matched_fragments": 148,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aliivibrio fischeri",
                "strain": "strain=DSM 507",
                "accession": "GCA_023983475.1",
                "taxid": 668,
                "species_taxid": 668,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 79.375,
                "matched_fragments": 249,
                "total_fragments": 1497,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_900166975.1",
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                "matched_fragments": 1422,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Photobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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            {
                "accession": "GCF_900166965.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Photobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.92",
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                "mean_intra_species_af": "0.94",
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            },
            {
                "accession": "GCF_002849605.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Photobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.77",
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                "mean_intra_species_af": "0.93",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003026395.1",
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                "num_clustered_genomes": 7,
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            },
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            },
            {
                "accession": "GCF_002954455.1",
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            },
            {
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            },
            {
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    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}