{ "type": "genome", "identifier": "GCF_024582835.1", "organism": "Vibrio japonicus", "title": "Vibrio japonicus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Southern Oregon University Biology Department", "publication": [ {} ], "properties": { "assembly_accession": "GCF_024582835.1", "bioproject": "PRJNA224116", "biosample": "SAMN29984769", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1824638", "species_taxid": "1824638", "organism_name": "Vibrio japonicus", "infraspecific_name": "strain=JCM 31412", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/07", "asm_name": "ASM2458283v1", "asm_submitter": "Southern Oregon University Biology Department", "gbrs_paired_asm": "GCA_024582835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/582/835/GCF_024582835.1_ASM2458283v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4235444", "genome_size_ungapped": "4235444", "gc_percent": "45.000000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_024582835.1-RS_2024_08_21", "annotation_date": "2024-08-21", "total_gene_count": "3991", "protein_coding_gene_count": "3789", "non_coding_gene_count": "159", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-07", "dateModified": "2022-08-07", "datePublished": "2022-08-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio japonicus" ], "sample_taxid": [ "1824638" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan: Inland Sea (Setonaikai), Ako City, Hyogo Prefecture" ], "sample_host_location_id": [], "data_size": "1.198 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4235444", "Number of Sequences": "3", "Longest Sequences (bp)": "2783552", "N50 (bp)": "2783552", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.0", "Number of CDSs": "3839", "Average Protein Length": "316.4", "Coding Ratio (%)": "86.0", "Number of rRNAs": "34", "Number of tRNAs": "118", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio nereis", "strain": "strain=NBRC 15637", "accession": "GCA_001591105.1", "taxid": 693, "species_taxid": 693, "relation_to_type": "type", "validated": true, "ani": 83.4796, "matched_fragments": 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"accession": "GCA_001011015.1", "taxid": 670, "species_taxid": 670, "relation_to_type": "type", "validated": true, "ani": 80.9142, "matched_fragments": 482, "total_fragments": 1410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio aquaticus", "strain": "strain=BEI207", "accession": "GCA_003970385.1", "taxid": 2496559, "species_taxid": 2496559, "relation_to_type": "type", "validated": true, "ani": 80.8938, "matched_fragments": 536, "total_fragments": 1410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio orientalis", "strain": "strain=CIP 102891", "accession": "GCA_000176235.1", "taxid": 28175, "species_taxid": 28175, "relation_to_type": "type", "validated": true, "ani": 80.8815, "matched_fragments": 553, "total_fragments": 1410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio parahaemolyticus", "strain": "strain=ATCC 17802", "accession": "GCA_001998785.1", "taxid": 670, "species_taxid": 670, 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80.8115, "matched_fragments": 475, "total_fragments": 1410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio panuliri", "strain": "strain=JCM 19500", "accession": "GCA_009938205.1", "taxid": 1381081, "species_taxid": 1381081, "relation_to_type": "type", "validated": true, "ani": 80.7932, "matched_fragments": 407, "total_fragments": 1410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio orientalis", "strain": "strain=CIP 102891", "accession": "GCA_000222645.2", "taxid": 28175, "species_taxid": 28175, "relation_to_type": "type", "validated": true, "ani": 80.6458, "matched_fragments": 535, "total_fragments": 1410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio pelagius", "strain": "strain=ATCC 25916", "accession": "GCA_024347575.1", "taxid": 28169, "species_taxid": 28169, "relation_to_type": "type", "validated": true, "ani": 80.5928, "matched_fragments": 400, "total_fragments": 1410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio panuliri", "strain": "strain=LBS 2", "accession": "GCA_008830195.1", "taxid": 1381081, "species_taxid": 1381081, "relation_to_type": "type", "validated": true, "ani": 80.5604, "matched_fragments": 406, "total_fragments": 1410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio ponticus", "strain": "strain=DSM 16217", "accession": "GCA_009938225.1", "taxid": 265668, "species_taxid": 265668, "relation_to_type": "type", "validated": true, "ani": 80.5296, "matched_fragments": 444, "total_fragments": 1410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio rhodolitus", "strain": "strain=G98", "accession": "GCA_003350325.1", "taxid": 2231649, "species_taxid": 2231649, "relation_to_type": "type", "validated": true, "ani": 80.4783, "matched_fragments": 419, "total_fragments": 1410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio 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