{
    "type": "genome",
    "identifier": "GCF_024583985.1",
    "organism": "Aliarcobacter vitoriensis",
    "title": "Aliarcobacter vitoriensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Ghent University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_024583985.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN25938065",
        "wgs_master": "JANJGA000000000.1",
        "refseq_category": "na",
        "taxid": "2011099",
        "species_taxid": "2011099",
        "organism_name": "Aliarcobacter vitoriensis",
        "infraspecific_name": "strain=LMG 30050",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/08/07",
        "asm_name": "ASM2458398v1",
        "asm_submitter": "Ghent University",
        "gbrs_paired_asm": "GCA_024583985.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/583/985/GCF_024583985.1_ASM2458398v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2417699",
        "genome_size_ungapped": "2417699",
        "gc_percent": "27.000000",
        "replicon_count": "0",
        "scaffold_count": "40",
        "contig_count": "40",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_024583985.1-RS_2024_08_22",
        "annotation_date": "2024-08-22",
        "total_gene_count": "2433",
        "protein_coding_gene_count": "2368",
        "non_coding_gene_count": "45",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-08-07",
    "dateModified": "2022-08-07",
    "datePublished": "2022-08-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Aliarcobacter vitoriensis"
        ],
        "sample_taxid": [
            "2011099"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Spain"
        ],
        "sample_host_location_id": [],
        "data_size": "0.647 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2417699",
        "Number of Sequences": "40",
        "Longest Sequences (bp)": "228727",
        "N50 (bp)": "127074",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "27.0",
        "Number of CDSs": "2353",
        "Average Protein Length": "314.8",
        "Coding Ratio (%)": "91.9",
        "Number of rRNAs": "2",
        "Number of tRNAs": "40",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Aliarcobacter vitoriensis",
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                "accession": "GCA_024583985.1",
                "taxid": 2011099,
                "species_taxid": 2011099,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 782,
                "total_fragments": 787,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aliarcobacter vitoriensis",
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                "accession": "GCA_003316695.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9932,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
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                "accession": "GCA_013201625.1",
                "taxid": 1355374,
                "species_taxid": 1355374,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aliarcobacter lanthieri",
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                "accession": "GCA_000585115.1",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aliarcobacter lanthieri",
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                "accession": "GCA_024584095.1",
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                "matched_fragments": 605,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aliarcobacter faecis",
                "strain": "strain=CCUG 66484",
                "accession": "GCA_013201705.1",
                "taxid": 1564138,
                "species_taxid": 1564138,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aliarcobacter faecis",
                "strain": "strain=LMG 28519",
                "accession": "GCA_024584135.1",
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                "species_taxid": 1564138,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aliarcobacter faecis",
                "strain": "strain=AF1078",
                "accession": "GCA_000585155.1",
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                "species_taxid": 1564138,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCA_003316695.1",
                "gtdb_species": "s__Aliarcobacter sp003316695",
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                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter",
                "ani_circumscription_radius": 95.0,
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                "min_intra_species_ani": "97.67",
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            },
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                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter",
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                "mean_intra_species_ani": "N/A",
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    },
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    "_genome_taxon": [
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    "quality": 3,
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}