{
    "type": "genome",
    "identifier": "GCF_024584025.1",
    "organism": "Aliarcobacter thereius LMG 24486",
    "title": "Aliarcobacter thereius LMG 24486",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Ghent University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_024584025.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN25938059",
        "wgs_master": "JANJGD000000000.1",
        "refseq_category": "na",
        "taxid": "1032240",
        "species_taxid": "544718",
        "organism_name": "Aliarcobacter thereius LMG 24486",
        "infraspecific_name": "strain=LMG 24486",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/08/07",
        "asm_name": "ASM2458402v1",
        "asm_submitter": "Ghent University",
        "gbrs_paired_asm": "GCA_024584025.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/584/025/GCF_024584025.1_ASM2458402v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1896155",
        "genome_size_ungapped": "1896155",
        "gc_percent": "27.000000",
        "replicon_count": "0",
        "scaffold_count": "6",
        "contig_count": "6",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_024584025.1-RS_2024_08_22",
        "annotation_date": "2024-08-22",
        "total_gene_count": "1966",
        "protein_coding_gene_count": "1914",
        "non_coding_gene_count": "43",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-08-07",
    "dateModified": "2022-08-07",
    "datePublished": "2022-08-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Aliarcobacter thereius LMG 24486"
        ],
        "sample_taxid": [
            "1032240"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Denmark"
        ],
        "sample_host_location_id": [],
        "data_size": "0.503 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1896155",
        "Number of Sequences": "6",
        "Longest Sequences (bp)": "615052",
        "N50 (bp)": "509145",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "26.8",
        "Number of CDSs": "1929",
        "Average Protein Length": "307.3",
        "Coding Ratio (%)": "93.8",
        "Number of rRNAs": "3",
        "Number of tRNAs": "38",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Aliarcobacter thereius",
                "strain": "strain=LMG 24486",
                "accession": "GCA_024584025.1",
                "taxid": 544718,
                "species_taxid": 544718,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 629,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aliarcobacter thereius",
                "strain": "strain=LMG 24486",
                "accession": "GCA_004214815.1",
                "taxid": 544718,
                "species_taxid": 544718,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9964,
                "matched_fragments": 628,
                "total_fragments": 629,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aliarcobacter thereius",
                "strain": "strain=DSM 23385",
                "accession": "GCA_005818985.1",
                "taxid": 544718,
                "species_taxid": 544718,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9951,
                "matched_fragments": 617,
                "total_fragments": 629,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aliarcobacter thereius",
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                "accession": "GCA_001695395.1",
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                "species_taxid": 544718,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9946,
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                "total_fragments": 629,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "[Arcobacter] porcinus",
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                "accession": "GCA_024584075.1",
                "taxid": 1935204,
                "species_taxid": 1935204,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.4235,
                "matched_fragments": 523,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Arcobacter] porcinus",
                "strain": "strain=CCUG 56899",
                "accession": "GCA_004299785.2",
                "taxid": 1935204,
                "species_taxid": 1935204,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.0319,
                "matched_fragments": 550,
                "total_fragments": 629,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCF_004214815.1",
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                "ani_circumscription_radius": 95.0,
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                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.76",
                "min_intra_species_ani": "98.06",
                "mean_intra_species_af": "0.91",
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                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_003544835.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter",
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                "num_clustered_genomes": 16,
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            {
                "accession": "GCF_014352935.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter",
                "ani_circumscription_radius": 95.0,
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                "num_clustered_genomes": 23,
                "status": "-"
            },
            {
                "accession": "GCF_003355515.1",
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            },
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            },
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                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter",
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            {
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                "mean_intra_species_ani": "N/A",
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                "accession": "GCF_900187115.1",
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            },
            {
                "accession": "GCF_003063295.1",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
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        "genome_size": null,
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": null,
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    },
    "_genome_taxon": [
        "Aliarcobacter",
        "thereius",
        "LMG",
        "24486"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}