{ "type": "genome", "identifier": "GCF_024609785.1", "organism": "Pseudalkalibacillus decolorationis", "title": "Pseudalkalibacillus decolorationis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Yunnan Institute of Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_024609785.1", "bioproject": "PRJNA224116", "biosample": "SAMN29837421", "wgs_master": "JANHJQ000000000.1", "refseq_category": "reference genome", "taxid": "163879", "species_taxid": "163879", "organism_name": "Pseudalkalibacillus decolorationis", "infraspecific_name": "strain=DSM 14890", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/09", "asm_name": "ASM2460978v1", "asm_submitter": "Yunnan Institute of Microbiology", "gbrs_paired_asm": "GCA_024609785.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/609/785/GCF_024609785.1_ASM2460978v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5272454", "genome_size_ungapped": "5271703", "gc_percent": "39.500000", "replicon_count": "0", "scaffold_count": "83", "contig_count": "83", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_024609785.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "5110", "protein_coding_gene_count": "4853", "non_coding_gene_count": "108", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-09", "dateModified": "2022-08-09", "datePublished": "2022-08-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudalkalibacillus decolorationis" ], "sample_taxid": [ "163879" ], "sample_host_organism": [ "wall paintings" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain" ], "sample_host_location_id": [], "data_size": "1.503 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5272454", "Number of Sequences": "83", "Longest Sequences (bp)": "408018", "N50 (bp)": "169985", "Gap Ratio (%)": "0.015458", "GCcontent (%)": "39.5", "Number of CDSs": "5005", "Average Protein Length": "288.3", "Coding Ratio (%)": "82.1", "Number of rRNAs": "8", "Number of tRNAs": "72", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudalkalibacillus decolorationis", "strain": "strain=DSM 14890", "accession": "GCA_024609785.1", "taxid": 163879, "species_taxid": 163879, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1715, "total_fragments": 1717, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Alkalihalobacillus okhensis", "strain": "strain=Kh10-101", "accession": "GCA_000787375.1", "taxid": 333138, "species_taxid": 333138, "relation_to_type": "type", "validated": true, "ani": 77.3736, "matched_fragments": 50, "total_fragments": 1717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Margalitia shackletonii", "strain": "strain=LMG 18435", "accession": "GCA_001420715.1", "taxid": 157838, "species_taxid": 157838, "relation_to_type": "type", "validated": true, "ani": 76.9906, "matched_fragments": 52, "total_fragments": 1717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus taeanensis", "strain": "strain=BH030017", "accession": "GCA_003318295.1", "taxid": 273032, "species_taxid": 273032, "relation_to_type": "type", "validated": true, "ani": 76.7755, "matched_fragments": 87, "total_fragments": 1717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Heyndrickxia oleronia", "strain": "strain=DSM 9356", "accession": "GCA_017809215.1", "taxid": 38875, "species_taxid": 38875, "relation_to_type": "type", "validated": true, "ani": 76.6162, "matched_fragments": 56, "total_fragments": 1717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Heyndrickxia oleronia", "strain": "strain=DSM 9356", "accession": "GCA_025263665.1", "taxid": 38875, "species_taxid": 38875, "relation_to_type": "type", "validated": true, "ani": 76.6079, "matched_fragments": 56, "total_fragments": 1717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fictibacillus macauensis", "strain": "strain=ZFHKF-1", "accession": "GCA_000269865.1", "taxid": 245160, "species_taxid": 245160, "relation_to_type": "type", "validated": true, "ani": 76.4258, "matched_fragments": 60, "total_fragments": 1717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sutcliffiella halmapala", "strain": "strain=DSM 8723", "accession": "GCA_002019665.1", "taxid": 79882, "species_taxid": 79882, "relation_to_type": "type", "validated": true, "ani": 76.2666, "matched_fragments": 54, "total_fragments": 1717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gottfriedia acidiceleris", "strain": "strain=DSM 18954", "accession": "GCA_002128425.1", "taxid": 371036, "species_taxid": 371036, "relation_to_type": "type", "validated": true, "ani": 76.0662, "matched_fragments": 51, "total_fragments": 1717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gottfriedia acidiceleris", "strain": "strain=NRRL B-41736", "accession": "GCA_002156925.1", "taxid": 371036, "species_taxid": 371036, "relation_to_type": "type", "validated": true, "ani": 76.0625, "matched_fragments": 54, "total_fragments": 1717, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002584535.1", "gtdb_species": "s__Bacillus_A cereus_AW", "ani": 77.802, "matched_fragments": 51, "total_fragments": 1717, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.12", "min_intra_species_ani": "98.24", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_000787375.1", "gtdb_species": "s__Bacillus_L okhensis", "ani": 77.3736, "matched_fragments": 50, "total_fragments": 1717, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_H;f__Bacillaceae_D;g__Bacillus_L", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001274725.1", "gtdb_species": "s__Cytobacillus globisporus", "ani": 77.2793, "matched_fragments": 56, "total_fragments": 1717, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001420715.1", "gtdb_species": "s__Margalitia shackletonii", "ani": 77.0365, "matched_fragments": 51, "total_fragments": 1717, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Margalitia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.16", "min_intra_species_ani": "98.74", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_003318295.1", "gtdb_species": "s__Maribacillus taeanensis", "ani": 76.8362, "matched_fragments": 89, "total_fragments": 1717, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__UBA6769;g__Maribacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001439605.1", "gtdb_species": "s__Cytobacillus praedii", "ani": 76.7554, "matched_fragments": 59, "total_fragments": 1717, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.20", "min_intra_species_ani": "99.20", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003184905.1", "gtdb_species": "s__Priestia sp003184905", "ani": 76.614, "matched_fragments": 52, "total_fragments": 1717, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_H;g__Priestia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017809215.1", "gtdb_species": "s__Heyndrickxia oleronia", "ani": 76.5683, "matched_fragments": 54, "total_fragments": 1717, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Heyndrickxia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.68", "min_intra_species_ani": "97.33", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_001619875.1", "gtdb_species": "s__Fictibacillus phosphorivorans_B", "ani": 76.5086, "matched_fragments": 59, "total_fragments": 1717, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__Fictibacillaceae;g__Fictibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000621445.1", "gtdb_species": "s__Bacillus_AO bogoriensis", "ani": 76.4936, "matched_fragments": 63, "total_fragments": 1717, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_H;f__Bacillaceae_F;g__Bacillus_AO", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000269865.1", "gtdb_species": "s__Fictibacillus_C macauensis", "ani": 76.3919, "matched_fragments": 61, "total_fragments": 1717, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__Fictibacillaceae;g__Fictibacillus_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000518865.1", "gtdb_species": "s__Metabacillus sp000518865", "ani": 76.375, "matched_fragments": 75, "total_fragments": 1717, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Metabacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005144865.1", "gtdb_species": "s__Anaerobacillus_A hwajinpoensis_A", "ani": 76.2364, "matched_fragments": 50, "total_fragments": 1717, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__HB172195;g__Anaerobacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002019665.1", "gtdb_species": "s__Sutcliffiella_A halmapala", "ani": 76.162, "matched_fragments": 54, "total_fragments": 1717, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_I;g__Sutcliffiella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004340305.1", "gtdb_species": "s__Gottfriedia sp004340305", "ani": 76.155, "matched_fragments": 57, "total_fragments": 1717, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Gottfriedia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002128425.1", "gtdb_species": "s__Gottfriedia acidiceler", "ani": 76.0887, "matched_fragments": 52, "total_fragments": 1717, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Gottfriedia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.12", "min_intra_species_ani": "96.26", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Pseudalkalibacillus", "decolorationis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }