{ "type": "genome", "identifier": "GCF_024614185.1", "organism": "Nocardioides carbamazepini", "title": "Nocardioides carbamazepini", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National University of Agriculture and Life Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_024614185.1", "bioproject": "PRJNA224116", "biosample": "SAMN19986612", "wgs_master": "JAHTLF000000000.1", "refseq_category": "reference genome", "taxid": "2854259", "species_taxid": "2854259", "organism_name": "Nocardioides carbamazepini", "infraspecific_name": "strain=CBZ_1", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/10", "asm_name": "ASM2461418v1", "asm_submitter": "National University of Agriculture and Life Sciences", "gbrs_paired_asm": "GCA_024614185.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/614/185/GCF_024614185.1_ASM2461418v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6301022", "genome_size_ungapped": "6300982", "gc_percent": "71.500000", "replicon_count": "0", "scaffold_count": "25", "contig_count": "25", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_024614185.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "5965", "protein_coding_gene_count": "5872", "non_coding_gene_count": "53", "pubmed_id": "35714383" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-10", "dateModified": "2022-08-10", "datePublished": "2022-08-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides carbamazepini" ], "sample_taxid": [ "2854259" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Hungary" ], "sample_host_location_id": [], "data_size": "1.674 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6301022", "Number of Sequences": "25", "Longest Sequences (bp)": "1317217", "N50 (bp)": "624291", "Gap Ratio (%)": "0.000889", "GCcontent (%)": "71.4", "Number of CDSs": "5919", "Average Protein Length": "330.3", "Coding Ratio (%)": "93.1", "Number of rRNAs": "3", "Number of tRNAs": "55", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides carbamazepini", "strain": "strain=CBZ_1", "accession": "GCA_024614185.1", "taxid": 2854259, "species_taxid": 2854259, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2089, "total_fragments": 2089, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nocardioides humi", "strain": "strain=DCY24", "accession": "GCA_006494775.1", "taxid": 449461, "species_taxid": 449461, "relation_to_type": "type", "validated": true, "ani": 87.1557, "matched_fragments": 1292, "total_fragments": 2089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides daeguensis", "strain": "strain=2C1-5", "accession": "GCA_019192965.1", "taxid": 908359, "species_taxid": 908359, "relation_to_type": "type", "validated": true, "ani": 86.7721, "matched_fragments": 1126, "total_fragments": 2089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides kongjuensis", "strain": "strain=DSM 19082", "accession": "GCA_013409625.1", "taxid": 349522, "species_taxid": 349522, "relation_to_type": "type", "validated": true, "ani": 86.6809, "matched_fragments": 1200, "total_fragments": 2089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides nitrophenolicus", "strain": "strain=DSM 15529", "accession": "GCA_016907515.1", "taxid": 60489, "species_taxid": 60489, "relation_to_type": "type", "validated": true, "ani": 86.436, "matched_fragments": 1311, "total_fragments": 2089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides albidus", "strain": "strain=CCTCC AB 2015297", "accession": "GCA_006335005.1", "taxid": 1517589, "species_taxid": 1517589, "relation_to_type": "type", "validated": true, "ani": 85.7406, "matched_fragments": 1098, "total_fragments": 2089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides aromaticivorans", "strain": "strain=DSM 15131", "accession": "GCA_013408525.1", "taxid": 200618, "species_taxid": 200618, "relation_to_type": "type", "validated": true, "ani": 84.3631, "matched_fragments": 1121, "total_fragments": 2089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides humilatus", "strain": "strain=BN130099", "accession": "GCA_008373755.1", "taxid": 2607660, "species_taxid": 2607660, "relation_to_type": "type", "validated": true, "ani": 81.1001, "matched_fragments": 815, "total_fragments": 2089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides sambongensis", "strain": "strain=KUDC 5002", "accession": "GCA_006494815.1", "taxid": 2589074, "species_taxid": 2589074, "relation_to_type": "type", "validated": true, "ani": 81.0176, "matched_fragments": 852, "total_fragments": 2089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides salarius", "strain": "strain=DSM 18239", "accession": "GCA_016907435.1", "taxid": 374513, "species_taxid": 374513, "relation_to_type": "type", "validated": true, "ani": 80.2849, "matched_fragments": 773, "total_fragments": 2089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides salarius", "strain": "strain=DSM 18239", "accession": "GCA_015070765.1", "taxid": 374513, "species_taxid": 374513, "relation_to_type": "type", "validated": true, "ani": 80.1691, "matched_fragments": 789, "total_fragments": 2089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides salarius", "strain": "strain=DSM 18239", "accession": "GCA_015339545.1", "taxid": 374513, "species_taxid": 374513, "relation_to_type": "type", "validated": true, "ani": 80.1648, "matched_fragments": 787, "total_fragments": 2089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides furvisabuli", "strain": "strain=JCM 13813", "accession": "GCA_021083185.1", "taxid": 375542, "species_taxid": 375542, "relation_to_type": "type", "validated": true, "ani": 79.7289, "matched_fragments": 672, "total_fragments": 2089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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