{ "tc_result": [ { "organism_name": "Stenotrophomonas pavanii", "strain": "strain=LMG 25348", "accession": "GCA_900101175.1", "taxid": 487698, "species_taxid": 487698, "relation_to_type": "type", "validated": true, "ani": 93.7944, "matched_fragments": 1289, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas pavanii", "strain": "strain=DSM 25135", "accession": "GCA_001431565.1", "taxid": 487698, "species_taxid": 487698, "relation_to_type": "type", "validated": true, "ani": 93.7429, "matched_fragments": 1245, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas sepilia", "strain": "strain=SM16975", "accession": "GCA_003244875.1", "taxid": 2860290, "species_taxid": 2860290, "relation_to_type": "type", "validated": true, "ani": 93.1056, "matched_fragments": 1253, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas maltophilia", "strain": "strain=NCTC10257", "accession": "GCA_900186865.1", "taxid": 40324, "species_taxid": 40324, "relation_to_type": "type", "validated": true, "ani": 92.4722, "matched_fragments": 1337, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Pseudomonas] hibiscicola", "strain": "strain=ATCC 19867", "accession": "GCA_000382065.1", "taxid": 86189, "species_taxid": 86189, "relation_to_type": "type", "validated": true, "ani": 92.4718, "matched_fragments": 1262, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas maltophilia", "strain": "strain=ATCC 13637", "accession": "GCA_001997185.1", "taxid": 40324, "species_taxid": 40324, "relation_to_type": "type", "validated": true, "ani": 92.4658, "matched_fragments": 1270, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas maltophilia", "strain": "strain=NBRC 14161", "accession": "GCA_001591205.1", "taxid": 40324, "species_taxid": 40324, "relation_to_type": "type", "validated": true, "ani": 92.3964, "matched_fragments": 1276, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas maltophilia", "strain": "strain=MTCC 434", "accession": "GCA_000597745.1", "taxid": 40324, "species_taxid": 40324, "relation_to_type": "type", "validated": true, "ani": 92.3541, "matched_fragments": 1197, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas lactitubi", "strain": "strain=M15", "accession": "GCA_002803515.1", "taxid": 2045214, "species_taxid": 2045214, "relation_to_type": "type", "validated": true, "ani": 88.6461, "matched_fragments": 1273, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas pennii", "strain": "strain=Sa5BUN4", "accession": "GCA_014836545.1", "taxid": 2762239, "species_taxid": 2762239, "relation_to_type": "type", "validated": true, "ani": 84.7121, "matched_fragments": 910, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas acidaminiphila", "strain": "strain=DSM 13117", "accession": "GCA_024221815.1", "taxid": 128780, "species_taxid": 128780, "relation_to_type": "type", "validated": true, "ani": 84.232, "matched_fragments": 841, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas pictorum", "strain": "strain=JCM 9942", "accession": "GCA_001310775.1", "taxid": 86184, "species_taxid": 86184, "relation_to_type": "type", "validated": true, "ani": 83.5744, "matched_fragments": 504, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas indica", "strain": "strain=PPL560", "accession": "GCA_022669045.1", "taxid": 2912242, "species_taxid": 2912242, "relation_to_type": "type", "validated": true, "ani": 82.7064, "matched_fragments": 863, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas translucens", "strain": "strain=ATCC 19319", "accession": "GCA_020880735.1", "taxid": 343, "species_taxid": 343, "relation_to_type": "type", "validated": true, "ani": 82.5325, "matched_fragments": 681, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000284595.1", "gtdb_species": "s__Stenotrophomonas maltophilia_F", "ani": 98.5841, "matched_fragments": 1402, "total_fragments": 1561, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.76", "min_intra_species_ani": "98.38", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.88", "num_clustered_genomes": 60, "status": "conclusive" }, { "accession": "GCF_002192255.1", "gtdb_species": "s__Stenotrophomonas sp002192255", "ani": 94.0503, "matched_fragments": 1333, "total_fragments": 1561, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.64", "min_intra_species_ani": "95.45", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.84", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_006970445.1", "gtdb_species": "s__Stenotrophomonas maltophilia_AU", "ani": 94.0131, "matched_fragments": 1319, "total_fragments": 1561, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900101175.1", "gtdb_species": "s__Stenotrophomonas pavanii", "ani": 93.7944, "matched_fragments": 1289, "total_fragments": 1561, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.59", "min_intra_species_ani": "98.08", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.84", "num_clustered_genomes": 20, "status": "-" }, { "accession": "GCF_002799155.1", "gtdb_species": "s__Stenotrophomonas maltophilia_R", "ani": 93.5117, "matched_fragments": 1288, "total_fragments": 1561, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002799245.1", "gtdb_species": "s__Stenotrophomonas maltophilia_S", "ani": 93.2817, "matched_fragments": 1321, "total_fragments": 1561, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900186865.1", "gtdb_species": "s__Stenotrophomonas maltophilia", "ani": 92.4722, "matched_fragments": 1337, "total_fragments": 1561, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.99", "min_intra_species_ani": "97.31", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 234, "status": "-" }, { "accession": "GCF_003205835.1", "gtdb_species": "s__Stenotrophomonas maltophilia_AL", "ani": 92.4371, "matched_fragments": 1299, "total_fragments": 1561, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.59", "min_intra_species_ani": "98.33", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.86", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_002138415.1", "gtdb_species": "s__Stenotrophomonas maltophilia_G", "ani": 92.3859, "matched_fragments": 1292, "total_fragments": 1561, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.93", "min_intra_species_ani": "95.59", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.87", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_004346925.1", "gtdb_species": "s__Stenotrophomonas maltophilia_A", "ani": 92.3112, "matched_fragments": 1269, "total_fragments": 1561, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.29", "min_intra_species_ani": "95.44", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.84", "num_clustered_genomes": 41, "status": "-" }, { "accession": "GCF_006974125.1", "gtdb_species": "s__Stenotrophomonas maltophilia_O", "ani": 92.0098, "matched_fragments": 1272, "total_fragments": 1561, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.85", "min_intra_species_ani": "98.84", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_002799165.1", "gtdb_species": "s__Stenotrophomonas maltophilia_Q", "ani": 91.6913, "matched_fragments": 1327, "total_fragments": 1561, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.69", "min_intra_species_ani": "95.30", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.83", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_013464915.1", "gtdb_species": "s__Stenotrophomonas maltophilia_AT", "ani": 91.5879, "matched_fragments": 1237, "total_fragments": 1561, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.65", "min_intra_species_ani": "98.65", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.93", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_003028475.1", "gtdb_species": "s__Stenotrophomonas sp003028475", "ani": 90.9562, "matched_fragments": 1240, "total_fragments": 1561, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.27", "min_intra_species_ani": "96.55", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" } ] }