{
    "type": "genome",
    "identifier": "GCF_024623275.1",
    "organism": "Adlercreutzia caecimuris",
    "title": "Adlercreutzia caecimuris",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "RWTH Aachen University Hospital",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_024623275.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN29593093",
        "wgs_master": "JANJZG000000000.1",
        "refseq_category": "na",
        "taxid": "671266",
        "species_taxid": "671266",
        "organism_name": "Adlercreutzia caecimuris",
        "infraspecific_name": "strain=DSM 21839",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/08/10",
        "asm_name": "ASM2462327v1",
        "asm_submitter": "RWTH Aachen University Hospital",
        "gbrs_paired_asm": "GCA_024623275.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/623/275/GCF_024623275.1_ASM2462327v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2737105",
        "genome_size_ungapped": "2737105",
        "gc_percent": "64.000000",
        "replicon_count": "0",
        "scaffold_count": "29",
        "contig_count": "29",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2023-08-26",
        "total_gene_count": "2225",
        "protein_coding_gene_count": "2152",
        "non_coding_gene_count": "61",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-08-10",
    "dateModified": "2022-08-10",
    "datePublished": "2022-08-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Adlercreutzia caecimuris"
        ],
        "sample_taxid": [
            "671266"
        ],
        "sample_host_organism": [
            "Mus musculus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Freising"
        ],
        "sample_host_location_id": [],
        "data_size": "0.761 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2737105",
        "Number of Sequences": "29",
        "Longest Sequences (bp)": "623687",
        "N50 (bp)": "207388",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "64.2",
        "Number of CDSs": "2217",
        "Average Protein Length": "351.7",
        "Coding Ratio (%)": "85.5",
        "Number of rRNAs": "3",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Adlercreutzia caecimuris",
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                "accession": "GCA_024623275.1",
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                "species_taxid": 671266,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 896,
                "total_fragments": 896,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Adlercreutzia caecimuris",
                "strain": "strain=B7",
                "accession": "GCA_000403355.2",
                "taxid": 671266,
                "species_taxid": 671266,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.3698,
                "matched_fragments": 793,
                "total_fragments": 896,
                "ani_threshold": 95,
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            },
            {
                "organism_name": "Adlercreutzia muris",
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                "accession": "GCA_008831045.1",
                "taxid": 1796610,
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "species_taxid": 1796610,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.798,
                "matched_fragments": 651,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Adlercreutzia mucosicola",
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                "accession": "GCA_000422625.1",
                "taxid": 580026,
                "species_taxid": 580026,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.2066,
                "matched_fragments": 591,
                "total_fragments": 896,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Adlercreutzia mucosicola",
                "strain": "strain=DSM 19490",
                "accession": "GCA_024623255.1",
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                "species_taxid": 580026,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.156,
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                "total_fragments": 896,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Adlercreutzia equolifaciens subsp. celatus",
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                "accession": "GCA_024171685.1",
                "taxid": 394340,
                "species_taxid": 446660,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.2823,
                "matched_fragments": 575,
                "total_fragments": 896,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Adlercreutzia equolifaciens subsp. celatus",
                "strain": "strain=JCM 14811",
                "accession": "GCA_016865385.1",
                "taxid": 394340,
                "species_taxid": 446660,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.2569,
                "matched_fragments": 584,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Adlercreutzia equolifaciens subsp. celatus",
                "strain": "strain=DSM 18785",
                "accession": "GCA_003726015.1",
                "taxid": 394340,
                "species_taxid": 446660,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.1651,
                "matched_fragments": 579,
                "total_fragments": 896,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Adlercreutzia equolifaciens subsp. equolifaciens",
                "strain": "strain=DSM 19450",
                "accession": "GCA_000478885.1",
                "taxid": 2864143,
                "species_taxid": 446660,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.0074,
                "matched_fragments": 574,
                "total_fragments": 896,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000403355.2",
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                "matched_fragments": 793,
                "total_fragments": 896,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Adlercreutzia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.41",
                "min_intra_species_ani": "97.35",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Adlercreutzia",
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                "status": "-"
            },
            {
                "accession": "GCF_000422625.1",
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                "status": "-"
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            {
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                "mean_intra_species_ani": "N/A",
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            {
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "bacillus_cell_shape": 0.0,
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    "_genome_taxon": [
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        "caecimuris"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}