{ "type": "genome", "identifier": "GCF_024623725.1", "organism": "Limnobacter parvus", "title": "Limnobacter parvus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_024623725.1", "bioproject": "PRJNA224116", "biosample": "SAMN27867302", "wgs_master": "JANKHG000000000.1", "refseq_category": "reference genome", "taxid": "2939690", "species_taxid": "2939690", "organism_name": "Limnobacter parvus", "infraspecific_name": "strain=YS8-69", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/10", "asm_name": "ASM2462372v1", "asm_submitter": "Zhejiang University", "gbrs_paired_asm": "GCA_024623725.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/623/725/GCF_024623725.1_ASM2462372v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3182053", "genome_size_ungapped": "3182053", "gc_percent": "51.500000", "replicon_count": "0", "scaffold_count": "27", "contig_count": "27", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_024623725.1-RS_2024_08_25", "annotation_date": "2024-08-25", "total_gene_count": "2981", "protein_coding_gene_count": "2917", "non_coding_gene_count": "44", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-10", "dateModified": "2022-08-10", "datePublished": "2022-08-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Limnobacter parvus" ], "sample_taxid": [ "2939690" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Xinjiang" ], "sample_host_location_id": [], "data_size": "0.900 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3182053", "Number of Sequences": "27", "Longest Sequences (bp)": "704212", "N50 (bp)": "453389", "Gap Ratio (%)": "0.000346", "GCcontent (%)": "51.7", "Number of CDSs": "2902", "Average Protein Length": "334.7", "Coding Ratio (%)": "91.6", "Number of rRNAs": "3", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Limnobacter alexandrii", "strain": "strain=LZ-4", "accession": "GCA_005871185.1", "taxid": 2570352, "species_taxid": 2570352, "relation_to_type": "type", "validated": true, "ani": 82.0986, "matched_fragments": 722, "total_fragments": 1050, "ani_threshold": 95, 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.10", "min_intra_species_ani": "98.01", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.86", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_005871185.1", "gtdb_species": "s__Limnobacter alexandrii", "ani": 82.102, "matched_fragments": 722, "total_fragments": 1050, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013004065.1", "gtdb_species": "s__Limnobacter sp002954425", "ani": 81.8522, "matched_fragments": 716, "total_fragments": 1050, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004291335.1", "gtdb_species": "s__Limnobacter thiooxidans", "ani": 80.9632, "matched_fragments": 634, "total_fragments": 1050, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.301, "doubling_h": null, "growth_tmp": 30.0, "optimum_tmp": 40.0, "optimum_ph": 7.25, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Limnobacter", "parvus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }