{
    "type": "genome",
    "identifier": "GCF_024626525.1",
    "organism": "Lederbergia panacisoli",
    "title": "Lederbergia panacisoli",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Fujian Academy of Agricultural Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_024626525.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN30090603",
        "wgs_master": "JANJGU000000000.1",
        "refseq_category": "reference genome",
        "taxid": "1255251",
        "species_taxid": "1255251",
        "organism_name": "Lederbergia panacisoli",
        "infraspecific_name": "strain=KACC 17503",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/08/10",
        "asm_name": "ASM2462652v1",
        "asm_submitter": "Fujian Academy of Agricultural Sciences",
        "gbrs_paired_asm": "GCA_024626525.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/626/525/GCF_024626525.1_ASM2462652v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4110058",
        "genome_size_ungapped": "4110038",
        "gc_percent": "37.500000",
        "replicon_count": "0",
        "scaffold_count": "43",
        "contig_count": "43",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_024626525.1-RS_2024_09_03",
        "annotation_date": "2024-09-03",
        "total_gene_count": "4037",
        "protein_coding_gene_count": "3896",
        "non_coding_gene_count": "92",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-08-10",
    "dateModified": "2022-08-10",
    "datePublished": "2022-08-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lederbergia panacisoli"
        ],
        "sample_taxid": [
            "1255251"
        ],
        "sample_host_organism": [
            "soil"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Fujian"
        ],
        "sample_host_location_id": [],
        "data_size": "1.163 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4110058",
        "Number of Sequences": "43",
        "Longest Sequences (bp)": "587836",
        "N50 (bp)": "199139",
        "Gap Ratio (%)": "0.000487",
        "GCcontent (%)": "37.6",
        "Number of CDSs": "3932",
        "Average Protein Length": "296.8",
        "Coding Ratio (%)": "85.2",
        "Number of rRNAs": "5",
        "Number of tRNAs": "68",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Lederbergia panacisoli",
                "strain": "strain=KACC 17503",
                "accession": "GCA_024626525.1",
                "taxid": 1255251,
                "species_taxid": 1255251,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1345,
                "total_fragments": 1348,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lederbergia citrisecundus",
                "strain": "strain=FJAT-49732",
                "accession": "GCA_018343695.1",
                "taxid": 2833583,
                "species_taxid": 2833583,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0168,
                "matched_fragments": 948,
                "total_fragments": 1348,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lederbergia citri",
                "strain": "strain=FJAT-49780",
                "accession": "GCA_018343625.1",
                "taxid": 2833580,
                "species_taxid": 2833580,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9123,
                "matched_fragments": 874,
                "total_fragments": 1348,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lederbergia wuyishanensis",
                "strain": "strain=CGMCC 1.12709",
                "accession": "GCA_022900255.1",
                "taxid": 1347903,
                "species_taxid": 1347903,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.384,
                "matched_fragments": 877,
                "total_fragments": 1348,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus niameyensis",
                "strain": "strain=SIT3",
                "accession": "GCA_001375535.1",
                "taxid": 1522308,
                "species_taxid": 1522308,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.35,
                "matched_fragments": 212,
                "total_fragments": 1348,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Siminovitchia fordii",
                "strain": "strain=DSM 16014",
                "accession": "GCA_000374565.1",
                "taxid": 254759,
                "species_taxid": 254759,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0629,
                "matched_fragments": 110,
                "total_fragments": 1348,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Siminovitchia fortis",
                "strain": "strain=DSM 16012",
                "accession": "GCA_003605365.2",
                "taxid": 254758,
                "species_taxid": 254758,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8529,
                "matched_fragments": 96,
                "total_fragments": 1348,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neobacillus vireti",
                "strain": "strain=LMG 21834",
                "accession": "GCA_000508325.2",
                "taxid": 220686,
                "species_taxid": 220686,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8377,
                "matched_fragments": 79,
                "total_fragments": 1348,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Heyndrickxia oleronia",
                "strain": "strain=DSM 9356",
                "accession": "GCA_025263665.1",
                "taxid": 38875,
                "species_taxid": 38875,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8307,
                "matched_fragments": 112,
                "total_fragments": 1348,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Siminovitchia thermophila",
                "strain": "strain=DSM 105453",
                "accession": "GCA_016909185.1",
                "taxid": 1245522,
                "species_taxid": 1245522,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4276,
                "matched_fragments": 86,
                "total_fragments": 1348,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neobacillus bataviensis",
                "strain": "strain=LMG 21833",
                "accession": "GCA_000307875.1",
                "taxid": 220685,
                "species_taxid": 220685,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1714,
                "matched_fragments": 80,
                "total_fragments": 1348,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Metabacillus litoralis",
                "strain": "strain=SW-211",
                "accession": "GCA_007994985.1",
                "taxid": 152268,
                "species_taxid": 152268,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.0858,
                "matched_fragments": 75,
                "total_fragments": 1348,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus aquiflavi",
                "strain": "strain=3H-10",
                "accession": "GCA_011008855.1",
                "taxid": 2672567,
                "species_taxid": 2672567,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0844,
                "matched_fragments": 62,
                "total_fragments": 1348,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_018343715.1",
                "gtdb_species": "s__FJAT-49711 sp018343715",
                "ani": 86.0959,
                "matched_fragments": 1068,
                "total_fragments": 1348,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__FJAT-49711",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018343695.1",
                "gtdb_species": "s__FJAT-49711 sp018343695",
                "ani": 82.0277,
                "matched_fragments": 949,
                "total_fragments": 1348,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__FJAT-49711",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018343625.1",
                "gtdb_species": "s__FJAT-49711 sp018343625",
                "ani": 81.9053,
                "matched_fragments": 875,
                "total_fragments": 1348,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__FJAT-49711",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018343525.1",
                "gtdb_species": "s__FJAT-49754 sp018343525",
                "ani": 78.1908,
                "matched_fragments": 349,
                "total_fragments": 1348,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__FJAT-49754",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.88",
                "min_intra_species_ani": "98.76",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_007679095.1",
                "gtdb_species": "s__DE0126 sp007679095",
                "ani": 77.5598,
                "matched_fragments": 205,
                "total_fragments": 1348,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__DE0126",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018343515.1",
                "gtdb_species": "s__Bacillus_AH sp018343515",
                "ani": 77.4699,
                "matched_fragments": 214,
                "total_fragments": 1348,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Bacillus_AH",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001375535.1",
                "gtdb_species": "s__Lederbergia niameyensis",
                "ani": 77.2829,
                "matched_fragments": 217,
                "total_fragments": 1348,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Lederbergia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014836955.1",
                "gtdb_species": "s__Siminovitchia sp014836955",
                "ani": 77.0002,
                "matched_fragments": 102,
                "total_fragments": 1348,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Siminovitchia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017355205.1",
                "gtdb_species": "s__Lederbergia sp017355205",
                "ani": 76.9226,
                "matched_fragments": 180,
                "total_fragments": 1348,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Lederbergia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.07",
                "min_intra_species_ani": "95.07",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_005154805.1",
                "gtdb_species": "s__Neobacillus sp005154805",
                "ani": 76.9088,
                "matched_fragments": 87,
                "total_fragments": 1348,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004006295.1",
                "gtdb_species": "s__Peribacillus asahii_A",
                "ani": 76.8719,
                "matched_fragments": 74,
                "total_fragments": 1348,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-1321;g__Peribacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003605365.2",
                "gtdb_species": "s__Siminovitchia fortis",
                "ani": 76.8266,
                "matched_fragments": 97,
                "total_fragments": 1348,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Siminovitchia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.09",
                "min_intra_species_ani": "98.04",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 16,
                "status": "-"
            },
            {
                "accession": "GCF_900199725.1",
                "gtdb_species": "s__Cytobacillus massiliigabonensis",
                "ani": 76.7316,
                "matched_fragments": 90,
                "total_fragments": 1348,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004358205.1",
                "gtdb_species": "s__Neobacillus salipaludis",
                "ani": 76.1756,
                "matched_fragments": 98,
                "total_fragments": 1348,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017355165.1",
                "gtdb_species": "s__Peribacillus sp017355165",
                "ani": 76.1413,
                "matched_fragments": 57,
                "total_fragments": 1348,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-1321;g__Peribacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Lederbergia",
        "panacisoli"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}