{ "type": "genome", "identifier": "GCF_024721155.1", "organism": "Mucilaginibacter phenanthrenivorans", "title": "Mucilaginibacter phenanthrenivorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Henan University of Science and Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_024721155.1", "bioproject": "PRJNA224116", "biosample": "SAMN20166960", "wgs_master": "JAHVAP000000000.1", "refseq_category": "reference genome", "taxid": "1234842", "species_taxid": "1234842", "organism_name": "Mucilaginibacter phenanthrenivorans", "infraspecific_name": "strain=BJC16-A38", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/19", "asm_name": "ASM2472115v1", "asm_submitter": "Henan University of Science and Technology", "gbrs_paired_asm": "GCA_024721155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/721/155/GCF_024721155.1_ASM2472115v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7250622", "genome_size_ungapped": "7250622", "gc_percent": "43.000000", "replicon_count": "0", "scaffold_count": "38", "contig_count": "38", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_024721155.1-RS_2024_09_04", "annotation_date": "2024-09-04", "total_gene_count": "6123", "protein_coding_gene_count": "6052", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-19", "dateModified": "2022-08-19", "datePublished": "2022-08-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Mucilaginibacter phenanthrenivorans" ], "sample_taxid": [ "1234842" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Daxing'anling" ], "sample_host_location_id": [], "data_size": "2.060 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7250622", "Number of Sequences": "38", "Longest Sequences (bp)": "1111934", "N50 (bp)": "499281", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.0", "Number of CDSs": "5974", "Average Protein Length": "352.1", "Coding Ratio (%)": "87.0", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mucilaginibacter xinganensis", "strain": "strain=BJC16-A31", "accession": "GCA_002257585.1", "taxid": 1234841, "species_taxid": 1234841, "relation_to_type": "type", "validated": true, "ani": 79.8269, "matched_fragments": 811, "total_fragments": 2400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter mallensis", "strain": "strain=MP1X4", "accession": "GCA_900105165.1", "taxid": 652787, "species_taxid": 652787, "relation_to_type": "type", "validated": true, "ani": 78.3335, "matched_fragments": 462, "total_fragments": 2400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter frigoritolerans", "strain": "strain=ATCC BAA-1854", "accession": "GCA_007830615.1", "taxid": 652788, "species_taxid": 652788, "relation_to_type": "type", "validated": true, "ani": 78.2893, "matched_fragments": 514, "total_fragments": 2400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gotjawali", "strain": "strain=CECT 8628", "accession": "GCA_014191635.1", "taxid": 1550579, "species_taxid": 1550579, "relation_to_type": "type", "validated": true, "ani": 78.0498, "matched_fragments": 543, "total_fragments": 2400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gotjawali", "strain": "strain=SA3-7", "accession": "GCA_002355435.1", "taxid": 1550579, "species_taxid": 1550579, "relation_to_type": "type", "validated": true, "ani": 78.0218, "matched_fragments": 543, "total_fragments": 2400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter ginsenosidivorax", "strain": "strain=KHI28", "accession": "GCA_007971525.1", "taxid": 862126, "species_taxid": 862126, "relation_to_type": "type", "validated": true, "ani": 77.8096, "matched_fragments": 501, "total_fragments": 2400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter lappiensis", "strain": "strain=ATCC BAA-1855", "accession": "GCA_900155965.1", "taxid": 354630, "species_taxid": 354630, "relation_to_type": "type", "validated": true, "ani": 77.7457, "matched_fragments": 399, "total_fragments": 2400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pineti", "strain": "strain=47C3B", "accession": "GCA_900101875.1", "taxid": 1391627, "species_taxid": 1391627, "relation_to_type": "type", "validated": true, "ani": 77.7095, "matched_fragments": 434, "total_fragments": 2400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter lappiensis", "strain": "strain=ANJLi2", "accession": "GCA_014200545.1", "taxid": 354630, "species_taxid": 354630, "relation_to_type": "type", "validated": true, "ani": 77.6655, "matched_fragments": 397, "total_fragments": 2400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter terrigena", "strain": "strain=17JY9-4", "accession": "GCA_004168255.1", "taxid": 2492395, "species_taxid": 2492395, "relation_to_type": "type", "validated": true, "ani": 77.6198, "matched_fragments": 337, "total_fragments": 2400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gossypiicola", "strain": "strain=Gh-48", "accession": "GCA_900110105.1", "taxid": 551995, "species_taxid": 551995, "relation_to_type": "type", "validated": true, "ani": 77.3801, "matched_fragments": 431, "total_fragments": 2400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gilvus", "strain": "strain=F01003", "accession": "GCA_004054195.1", "taxid": 2305909, "species_taxid": 2305909, "relation_to_type": "type", "validated": true, "ani": 77.3608, "matched_fragments": 335, "total_fragments": 2400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pallidiroseus", "strain": "strain=dk17", "accession": "GCA_007846085.1", "taxid": 2599295, "species_taxid": 2599295, "relation_to_type": "type", "validated": true, "ani": 77.3575, "matched_fragments": 234, "total_fragments": 2400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter celer", "strain": "strain=HYN0043", "accession": "GCA_003576455.2", "taxid": 2305508, "species_taxid": 2305508, "relation_to_type": "type", "validated": true, "ani": 77.2725, "matched_fragments": 439, "total_fragments": 2400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter roseus", "strain": "strain=LMG 28454", "accession": "GCA_021215455.1", "taxid": 1528868, "species_taxid": 1528868, "relation_to_type": "type", "validated": true, "ani": 77.2174, "matched_fragments": 247, "total_fragments": 2400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter achroorhodeus", "strain": "strain=MJ1a", "accession": "GCA_007846095.1", "taxid": 2599294, "species_taxid": 2599294, "relation_to_type": "type", "validated": true, "ani": 77.1977, "matched_fragments": 229, "total_fragments": 2400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter conchicola", "strain": "strain=MYSH2", "accession": "GCA_003432115.1", "taxid": 2303333, "species_taxid": 2303333, "relation_to_type": "type", "validated": true, "ani": 77.0892, "matched_fragments": 277, "total_fragments": 2400, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900142915.1", "gtdb_species": "s__Mucilaginibacter sp900142915", "ani": 80.7009, "matched_fragments": 1177, "total_fragments": 2400, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002257585.1", "gtdb_species": "s__Mucilaginibacter xinganensis", 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6.449, "genome_size": 6405217.25, "gc_content": 43.045, "coding_genes": 5407.0, "rRNA16S_genes": 2.0, "tRNA_genes": 47.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.269, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.73, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Mucilaginibacter", "phenanthrenivorans" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }