# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_59	LOCUS_00590	sequence1:64199..65932(+)	partial			WP_010989332.1	toxin	72.4	69.0	90.7
MGA_63	LOCUS_00630	sequence1:68551..70095(+)	internal_stop_codon	68467..68469(+)		WP_010989332.1	toxin	79.0	68.7	83.0
MGA_128	LOCUS_01280	sequence1:137204..138634(+)	partial			WP_010989355.1	T7SS effector LXG polymorphic toxin	67.6	69.7	93.8
MGA_130	LOCUS_01300	sequence1:139098..139253(+)	partial			WP_008946553.1	hypothetical protein	98.0	41.3	92.0
MGA_140	LOCUS_01400	sequence1:150034..150813(+)	partial			WP_034349500.1	serine hydrolase	73.7	72.5	30.3
MGA_176	LOCUS_01760	sequence1:192264..192572(+)	frameshift		192786	WP_003722725.1	septation regulator SpoVG	84.3	84.3	100.0
MGA_177	LOCUS_01770	sequence1:192691..192825(+)	frameshift		192789	WP_003722726.1	septation regulator SpoVG	88.6	38.2	84.6
MGA_178	LOCUS_01780	sequence1:192828..192998(+)	frameshift		192789	WP_003722726.1	septation regulator SpoVG	67.9	37.3	100.0
MGA_241	LOCUS_02390	sequence1:268713..269798(-)	partial			WP_010989462.1	class 1 internalin InlA	76.7	31.6	34.4
MGA_253	LOCUS_02510	sequence1:281652..282311(+)	partial			WP_010966294.1	ABC-F family ATP-binding cassette domain-containing protein	95.9	36.6	31.4
MGA_303	LOCUS_03010	sequence1:333469..334008(+)	partial			WP_010989431.1	LXG domain-containing protein	100.0	36.5	92.7
MGA_318	LOCUS_03160	sequence1:344150..346120(+)	partial			WP_010989462.1	class 1 internalin InlA	89.0	73.8	49.8
MGA_332	LOCUS_03300	sequence1:359858..360355(+)	frameshift		360322	WP_010989438.1	iron uptake transporter deferrochelatase/peroxidase subunit	97.6	38.2	88.8
MGA_333	LOCUS_03310	sequence1:360394..361122(+)	frameshift		360322	WP_010989438.1	iron uptake transporter deferrochelatase/peroxidase subunit	100.0	57.5	99.2
MGA_346	LOCUS_03440	sequence1:369528..371138(+)	partial			WP_011837107.1	ATP-binding protein	45.7	45.3	30.8
MGA_363	LOCUS_03610	sequence1:385969..387201(+)	partial			WP_000791146.1	M4 family metallopeptidase	56.3	26.6	33.1
MGA_473	LOCUS_04710	sequence1:503094..504299(-)	partial			WP_010905481.1	restriction endonuclease subunit S	44.4	43.2	59.6
MGA_499	LOCUS_04970	sequence1:532429..533199(-)	frameshift		532524	WP_003721341.1	sugar-binding transcriptional regulator	91.8	74.6	92.3
MGA_504	LOCUS_05020	sequence1:537638..538162(+)	frameshift		538126	WP_010989514.1	DUF916 and DUF3324 domain-containing protein	81.0	41.1	77.3
MGA_505	LOCUS_05030	sequence1:538306..538668(+)	frameshift		538129	WP_010989514.1	DUF916 and DUF3324 domain-containing protein	100.0	35.0	73.3
MGA_554	LOCUS_05520	sequence1:590864..591283(+)	internal_stop_codon	590819..590821(+)		WP_003723402.1	HdeD family acid-resistance protein	99.3	78.9	87.0
MGA_601	LOCUS_05990	sequence1:635765..635983(+)	frameshift		635959	WP_003721766.1	GntR family transcriptional regulator	94.4	31.9	95.6
MGA_602	LOCUS_06000	sequence1:635980..636405(+)	frameshift		635959	WP_003721766.1	GntR family transcriptional regulator	100.0	66.2	92.9
MGA_611	LOCUS_06090	sequence1:643963..645804(+)	partial			WP_010989452.1	class 1 internalin InlF	91.5	68.1	40.1
MGA_615	LOCUS_06130	sequence1:648269..650758(+)	partial			WP_010989427.1	class 1 internalin InlI	41.3	19.6	41.4
MGA_685	LOCUS_06830	sequence1:708955..709167(-)	partial			WP_003721846.1	LPXTG cell wall anchor domain-containing protein	71.4	71.4	76.0
MGA_691	LOCUS_06890	sequence1:713977..715530(+)	partial			WP_010989386.1	class 1 internalin InlH	79.1	71.5	35.9
MGA_692	LOCUS_06900	sequence1:715592..717565(-)	partial			WP_010989876.1	class 1 internalin InlL	71.1	76.4	54.6
MGA_725	LOCUS_07230	sequence1:748521..749171(-)	frameshift		749182	WP_003721899.1	PTS mannose/fructose/sorbose transporter subunit IIC	91.2	73.0	92.9
MGA_726	LOCUS_07240	sequence1:749168..749335(-)	frameshift		749182	WP_003721899.1	PTS mannose/fructose/sorbose transporter subunit IIC	100.0	20.4	94.5
MGA_732	LOCUS_07300	sequence1:756187..756540(+)	frameshift		756489,756492	WP_010989571.1	2-hydroxyacyl-CoA dehydratase	97.4	7.7	89.5
MGA_788	LOCUS_07860	sequence1:818163..818720(+)	internal_stop_codon	818718..818720(+)		WP_010989593.1	amino acid ABC transporter substrate-binding protein/permease	100.0	38.5	96.2
MGA_789	LOCUS_07870	sequence1:818751..819605(+)	internal_stop_codon	818718..818720(+)		WP_010989593.1	amino acid ABC transporter substrate-binding protein/permease	100.0	59.2	95.4
MGA_879	LOCUS_08770	sequence1:907416..907685(+)	partial			WP_001830478.1	MFS transporter	71.9	15.5	39.1
MGA_948	LOCUS_09460	sequence1:969178..969387(-)	partial			WP_003722866.1	YkvS family protein	87.0	63.8	100.0
MGA_1004	LOCUS_10020	sequence1:1019606..1020103(+)	frameshift		1019351	WP_003732696.1	DUF5068 domain-containing protein	100.0	57.7	72.7
MGA_1015	LOCUS_10130	sequence1:1034904..1036994(+)	partial			WP_011674970.1	membrane protein	55.5	60.9	26.1
MGA_1016	LOCUS_10140	sequence1:1037082..1039406(+)	partial			WP_010989657.1	CDP-glycerol glycerophosphotransferase family protein	47.9	52.9	35.6
MGA_1021	LOCUS_10190	sequence1:1043450..1044838(+)	partial			WP_009968267.1	glycosyltransferase family 2 protein	69.7	71.5	42.5
MGA_1022	LOCUS_10200	sequence1:1044838..1045992(+)	partial			WP_003243463.1	teichoic acid poly(glycerol phosphate) polymerase	99.0	51.3	56.5
MGA_1031	LOCUS_10290	sequence1:1053292..1053828(+)	partial			WP_000890153.1	hypothetical protein	86.5	40.4	27.4
MGA_1032	LOCUS_10300	sequence1:1054057..1054620(+)	partial			WP_002359819.1	hypothetical protein	63.6	57.8	42.5
MGA_1035	LOCUS_10330	sequence1:1055556..1056953(+)	partial			WP_010989340.1	LXG domain-containing protein	53.3	48.4	41.0
MGA_1063	LOCUS_10610	sequence1:1077960..1078151(-)	frameshift		1078156	WP_003721549.1	PocR ligand-binding domain-containing protein	100.0	21.4	93.7
MGA_1064	LOCUS_10620	sequence1:1078148..1078843(-)	frameshift		1078156	WP_003721549.1	PocR ligand-binding domain-containing protein	93.9	73.8	96.8
MGA_1120	LOCUS_11180	sequence1:1126099..1126338(+)	frameshift		1126335	WP_010989706.1	ATP-binding cassette domain-containing protein	100.0	29.5	93.7
MGA_1121	LOCUS_11190	sequence1:1126395..1126904(+)	frameshift		1126335	WP_010989706.1	ATP-binding cassette domain-containing protein	100.0	63.1	90.5
MGA_1156	LOCUS_11540	sequence1:1164112..1167825(+)	partial			WP_010989982.1	lmo2396 family class 1 internalin	61.0	78.7	32.0
MGA_1313	LOCUS_13110	sequence1:1319267..1319554(+)	frameshift		1319497	WP_003723916.1	ABC transporter permease	81.1	24.4	100.0
MGA_1314	LOCUS_13120	sequence1:1319464..1320216(+)	frameshift		1319497	WP_003723916.1	ABC transporter permease	95.6	75.6	97.1
MGA_1327	LOCUS_13250	sequence1:1334220..1334360(+)	frameshift		1334160	WP_010990113.1	DNA mismatch repair protein MutS	100.0	5.3	93.5
MGA_1338	LOCUS_13360	sequence1:1344539..1345879(-)	partial			WP_010989355.1	T7SS effector LXG polymorphic toxin	75.6	72.9	83.7
MGA_1472	LOCUS_14700	sequence1:1483019..1483396(-)	partial			WP_010989739.1	A24 family peptidase	100.0	53.0	68.0
MGA_1487	LOCUS_14850	sequence1:1500910..1501770(-)	frameshift		1501895	WP_003723249.1	DNA polymerase I	100.0	32.7	98.3
MGA_1488	LOCUS_14860	sequence1:1501857..1503536(-)	frameshift		1501895	WP_003723249.1	DNA polymerase I	98.4	62.9	94.0
MGA_1510	LOCUS_15080	sequence1:1527067..1527504(-)	partial			WP_011101828.1	MerR family transcriptional regulator	79.3	68.0	36.5
MGA_1511	LOCUS_15090	sequence1:1528006..1528944(+)	internal_stop_codon	1528942..1528944(+)		WP_002680024.1	recombinase family protein	96.2	49.7	46.4
MGA_1512	LOCUS_15100	sequence1:1529143..1529700(+)	internal_stop_codon	1528942..1528944(+)		WP_002324544.1	site-specific resolvase TndX	82.7	28.7	24.8
MGA_1736	LOCUS_17310	sequence1:1768082..1770781(-)	partial			WP_010989814.1	LPXTG cell wall anchor domain-containing protein	25.1	25.1	90.7
MGA_1747	LOCUS_17420	sequence1:1782896..1783186(-)	internal_stop_codon	1782896..1782898(-)		WP_003723871.1	transcription factor FapR	100.0	50.8	100.0
MGA_1911	LOCUS_19060	sequence1:1946569..1946706(+)	partial			WP_003727979.1	hypothetical protein	71.1	71.1	93.8
MGA_1924	LOCUS_19190	sequence1:1960330..1962624(-)	partial			WP_009932650.1	NlpC/P60 family protein	17.0	57.3	50.4
MGA_2016	LOCUS_20110	sequence1:2055674..2056282(-)	frameshift		2056296	WP_009931796.1	multidrug efflux MATE transporter FepA	100.0	45.6	86.6
MGA_2017	LOCUS_20120	sequence1:2056267..2057004(-)	frameshift		2056299	WP_009931796.1	multidrug efflux MATE transporter FepA	96.3	53.3	95.8
MGA_2079	LOCUS_20740	sequence1:2121323..2121499(+)	partial			WP_003722274.1	hypothetical protein	48.3	48.3	100.0
MGA_2197	LOCUS_21920	sequence1:2251320..2251556(-)	partial			WP_003723667.1	IDEAL domain-containing protein	100.0	66.1	96.2
MGA_2204	LOCUS_21990	sequence1:2257895..2258020(+)	internal_stop_codon	2257868..2257870(+)		WP_003731859.1	aminopeptidase C	100.0	9.3	95.1
MGA_2384	LOCUS_23770	sequence1:2444946..2445101(-)	internal_stop_codon	2445249..2445251(-)		WP_009924458.1	DEAD/DEAH box helicase	100.0	11.6	74.5
MGA_2385	LOCUS_23780	sequence1:2445249..2445920(-)	internal_stop_codon	2445249..2445251(-)		WP_009924458.1	DEAD/DEAH box helicase	100.0	50.8	82.5
MGA_2452	LOCUS_24450	sequence1:2510162..2512987(-)	partial			WP_010989452.1	class 1 internalin InlF	45.1	53.3	44.8
MGA_2553	LOCUS_25440	sequence1:2606535..2606753(-)	partial			WP_010990036.1	helix-turn-helix domain-containing protein	75.0	20.1	92.6
MGA_2674	LOCUS_26650	sequence1:2729053..2730015(-)	partial			WP_055270450.1	bacteriophage abortive infection AbiH family protein	91.2	73.3	22.6
MGA_2726	LOCUS_27170	sequence2:3708..3989(+)	frameshift		3938	WP_165992825.1	IS3 family transposase	88.2	21.5	59.8
MGA_2727	LOCUS_27180	sequence2:4103..4852(+)	frameshift		3950	WP_088197835.1	IS3-like element ISSag5 family transposase	98.8	64.6	48.6
MGA_2735	LOCUS_27260	sequence2:9262..10149(-)	frameshift		10211	WP_165992825.1	IS3 family transposase	95.3	73.0	49.1
MGA_2736	LOCUS_27270	sequence2:10161..10454(-)	frameshift		10211	WP_165992825.1	IS3 family transposase	80.4	20.5	56.4
MGA_2740	LOCUS_27310	sequence2:14578..16419(+)	partial			WP_211204934.1	site-specific DNA-methyltransferase	71.0	84.6	36.1
MGA_2742	LOCUS_27330	sequence2:19684..19869(-)	partial			WP_003548064.1	type II toxin-antitoxin system YafQ family toxin	82.0	43.5	56.0
MGA_2743	LOCUS_27340	sequence2:19811..19984(-)	partial			WP_103152732.1	IS5 family transposase	78.9	17.2	95.6
MGA_2752	LOCUS_27430	sequence2:30294..30980(+)	partial			WP_001041726.1	class A sortase	55.7	58.6	41.7
MGA_2759	LOCUS_27500	sequence2:37424..37825(-)	partial			WP_061086363.1	IS6-like element IS1216 family transposase	89.5	52.7	97.5
MGA_2761	LOCUS_27520	sequence2:39627..40496(-)	partial			WP_002287807.1	ABC transporter permease/substrate binding protein	98.6	48.7	47.9
MGA_2764	LOCUS_27550	sequence2:41406..42131(+)	partial			WP_011674077.1	ISLre2-like element ISLca4 family transposase	88.4	45.2	32.9
MGA_2765	LOCUS_27560	sequence2:42594..43718(+)	internal_stop_codon	43716..43718(+)		WP_002289122.1	heavy metal translocating P-type ATPase	92.2	54.4	45.3
MGA_2766	LOCUS_27570	sequence2:43767..44477(+)	internal_stop_codon	43716..43718(+)		WP_002386960.1	heavy metal translocating P-type ATPase	91.1	34.2	43.8
MGA_2767	LOCUS_27580	sequence2:44548..44949(-)	partial			WP_000531736.1	CadD family cadmium resistance transporter	99.2	64.6	49.6
MGA_2768	LOCUS_27590	sequence2:45679..45960(-)	frameshift,internal_stop_codon	45700..45702(-),45802..45804(-)	45747,45855	WP_061086363.1	IS6-like element IS1216 family transposase	38.7	15.9	94.4
MGA_2775	LOCUS_27660	sequence2:51406..52038(+)	partial			WP_000843735.1	DUF536 domain-containing protein	72.4	62.8	27.0
MGA_2776	LOCUS_27670	sequence2:52049..53464(+)	partial			WP_002287735.1	HsdR family type I site-specific deoxyribonuclease	98.3	44.2	52.9
MGA_2791	LOCUS_27820	sequence2:60910..61566(+)	partial			WP_000738394.1	hypothetical protein	61.5	46.0	25.7
MGA_2792	LOCUS_27830	sequence2:61836..62027(+)	frameshift		62018	WP_011241777.1	recombinase family protein	96.8	31.4	68.9
MGA_2793	LOCUS_27840	sequence2:62057..62422(+)	frameshift		62018	WP_011674185.1	recombinase family protein	100.0	61.5	62.8
MGA_2803	LOCUS_27940	sequence2:69142..70218(+)	partial			WP_011674160.1	NlpC/P60 family protein	51.1	56.5	40.1
MGA_2815	LOCUS_28060	sequence2:78597..79679(+)	partial			WP_047936604.1	ArdC-like ssDNA-binding domain-containing protein	93.1	42.0	36.2
MGA_2818	LOCUS_28090	sequence2:81775..82257(+)	internal_stop_codon	82255..82257(+)		WP_011101137.1	DNA/RNA non-specific endonuclease	69.4	34.2	59.5
MGA_2831	LOCUS_28220	sequence2:91320..91907(-)	partial			WP_165992825.1	IS3 family transposase	98.5	50.4	47.9
MGA_2832	LOCUS_28230	sequence2:91999..92493(-)	internal_stop_codon	92614..92616(-)		WP_011020063.1	IS21-like element ISMac3 family helper ATPase IstB	93.9	59.9	46.8
MGA_2844	LOCUS_28350	sequence2:100103..100438(-)	partial			WP_011391783.1	helix-turn-helix transcriptional regulator	55.9	53.9	38.7
MGA_2846	LOCUS_28370	sequence2:101014..103197(+)	partial			WP_010774229.1	DEAD/DEAH box helicase family protein	45.3	10.3	48.2
