{ "type": "genome", "identifier": "GCF_024721975.1", "organism": "Paenibacillus endoradicis", "title": "Paenibacillus endoradicis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ecology and Nature Conservation Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_024721975.1", "bioproject": "PRJNA224116", "biosample": "SAMN30308452", "wgs_master": "JANQBB000000000.1", "refseq_category": "reference genome", "taxid": "2972487", "species_taxid": "2972487", "organism_name": "Paenibacillus endoradicis", "infraspecific_name": "strain=T3-5-0-4", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/20", "asm_name": "ASM2472197v1", "asm_submitter": "Ecology and Nature Conservation Institute", "gbrs_paired_asm": "GCA_024721975.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/721/975/GCF_024721975.1_ASM2472197v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5892720", "genome_size_ungapped": "5892720", "gc_percent": "38.000000", "replicon_count": "0", "scaffold_count": "12", "contig_count": "12", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_024721975.1-RS_2024_09_05", "annotation_date": "2024-09-05", "total_gene_count": "5168", "protein_coding_gene_count": "5051", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-20", "dateModified": "2022-08-20", "datePublished": "2022-08-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus endoradicis" ], "sample_taxid": [ "2972487" ], "sample_host_organism": [ "Larix gmelinii" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: greater Khingan" ], "sample_host_location_id": [], "data_size": "1.665 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 8.33, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5892720", "Number of Sequences": "12", "Longest Sequences (bp)": "1355421", "N50 (bp)": "859719", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.8", "Number of CDSs": "5171", "Average Protein Length": "327.4", "Coding Ratio (%)": "86.2", "Number of rRNAs": "1", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus macquariensis subsp. macquariensis", "strain": "strain=DSM 2", "accession": "GCA_001637165.1", "taxid": 1468, "species_taxid": 948756, "relation_to_type": "type", "validated": true, "ani": 78.0555, "matched_fragments": 128, "total_fragments": 1959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus macquariensis", "strain": "strain=ATCC 23464", "accession": "GCA_900156375.1", "taxid": 948756, "species_taxid": 948756, "relation_to_type": "type", "validated": true, "ani": 78.0049, "matched_fragments": 127, "total_fragments": 1959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus antarcticus", "strain": "strain=CECT 5836", "accession": "GCA_001637225.1", "taxid": 253703, "species_taxid": 253703, "relation_to_type": "type", "validated": true, "ani": 77.9409, "matched_fragments": 104, "total_fragments": 1959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus alkaliterrae", "strain": "strain=DSM 17040", "accession": "GCA_021532375.1", "taxid": 320909, "species_taxid": 320909, "relation_to_type": "type", "validated": true, "ani": 77.3988, "matched_fragments": 74, "total_fragments": 1959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus uliginis", "strain": "strain=N3/975", "accession": "GCA_900177425.1", "taxid": 683737, "species_taxid": 683737, "relation_to_type": "type", "validated": true, "ani": 77.2992, "matched_fragments": 57, "total_fragments": 1959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus albiflavus", "strain": "strain=18JY21-1", "accession": "GCA_004344915.1", "taxid": 2545760, "species_taxid": 2545760, "relation_to_type": "type", "validated": true, "ani": 77.2588, "matched_fragments": 65, "total_fragments": 1959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus glycanilyticus subsp. hiroshimensis", "strain": "strain=CCI5", "accession": "GCA_015473105.1", "taxid": 2805378, "species_taxid": 126569, "relation_to_type": "type", "validated": true, "ani": 77.0646, "matched_fragments": 69, "total_fragments": 1959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus prosopidis", "strain": "strain=CECT 7506", "accession": "GCA_003337375.1", "taxid": 630520, "species_taxid": 630520, "relation_to_type": "type", "validated": true, "ani": 77.0365, "matched_fragments": 87, "total_fragments": 1959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus xylanexedens", "strain": "strain=DSM 21292", "accession": "GCA_017874615.1", "taxid": 528191, "species_taxid": 528191, "relation_to_type": "suspected-type", "validated": true, "ani": 76.7122, "matched_fragments": 65, "total_fragments": 1959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus turicensis", "strain": "strain=DSM 14349", "accession": "GCA_017873435.1", "taxid": 160487, "species_taxid": 160487, "relation_to_type": "type", "validated": true, "ani": 76.578, "matched_fragments": 60, "total_fragments": 1959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus pectinilyticus", "strain": "strain=KCTC13222", "accession": "GCA_001700435.1", "taxid": 512399, "species_taxid": 512399, "relation_to_type": "type", "validated": true, "ani": 76.5414, "matched_fragments": 64, "total_fragments": 1959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus assamensis", "strain": "strain=DSM 18201", "accession": "GCA_000422445.1", "taxid": 311244, "species_taxid": 311244, "relation_to_type": "type", "validated": true, "ani": 76.532, "matched_fragments": 62, "total_fragments": 1959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus oryzisoli", "strain": "strain=1ZS3-15", "accession": "GCA_001653565.1", "taxid": 1850517, "species_taxid": 1850517, "relation_to_type": "type", "validated": true, "ani": 76.154, "matched_fragments": 56, "total_fragments": 1959, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 8.33, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_019113605.1", "gtdb_species": "s__Paenibacillus_C intestinavium", "ani": 84.1263, "matched_fragments": 811, "total_fragments": 1959, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001637225.1", "gtdb_species": "s__Paenibacillus antarcticus", "ani": 77.9752, "matched_fragments": 103, "total_fragments": 1959, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": 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"num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003217535.1", "gtdb_species": "s__Paenibacillus_C sp003217535", "ani": 77.2583, "matched_fragments": 82, "total_fragments": 1959, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003337375.1", "gtdb_species": "s__Paenibacillus_C prosopidis", "ani": 77.0365, "matched_fragments": 87, "total_fragments": 1959, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Paenibacillus", "endoradicis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }