{ "type": "genome", "identifier": "GCF_024752335.1", "organism": "Ancylobacter mangrovi", "title": "Ancylobacter mangrovi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_024752335.1", "bioproject": "PRJNA224116", "biosample": "SAMN30276371", "wgs_master": "JANTHY000000000.1", "refseq_category": "reference genome", "taxid": "2972472", "species_taxid": "2972472", "organism_name": "Ancylobacter mangrovi", "infraspecific_name": "strain=GSK1Z-4-2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/27", "asm_name": "ASM2475233v1", "asm_submitter": "Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences", "gbrs_paired_asm": "GCA_024752335.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/752/335/GCF_024752335.1_ASM2475233v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5002696", "genome_size_ungapped": "5002696", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "18", "contig_count": "18", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2023-09-13", "total_gene_count": "4686", "protein_coding_gene_count": "4597", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-27", "dateModified": "2022-08-27", "datePublished": "2022-08-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Ancylobacter mangrovi" ], "sample_taxid": [ "2972472" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Guangxi Zhang Autonomous Region" ], "sample_host_location_id": [], "data_size": "1.348 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5002696", "Number of Sequences": "18", "Longest Sequences (bp)": "1208948", "N50 (bp)": "794430", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.0", "Number of CDSs": "4665", "Average Protein Length": "320.2", "Coding Ratio (%)": "89.6", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Starkeya novella", "strain": "strain=DSM 506", "accession": "GCA_000092925.1", "taxid": 921, 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95, "status": "below_threshold" }, { "organism_name": "Methylobacterium goesingense", "strain": "strain=DSM 21331", "accession": "GCA_022179225.1", "taxid": 243690, "species_taxid": 243690, "relation_to_type": "type", "validated": true, "ani": 77.3913, "matched_fragments": 385, "total_fragments": 1657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium crusticola", "strain": "strain=KCTC 52305", "accession": "GCA_022179145.1", "taxid": 1697972, "species_taxid": 1697972, "relation_to_type": "type", "validated": true, "ani": 77.2435, "matched_fragments": 577, "total_fragments": 1657, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000092925.1", "gtdb_species": "s__Starkeya novella", "ani": 85.3854, "matched_fragments": 1032, "total_fragments": 1657, "gtdb_taxonomy": 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