{ "type": "genome", "identifier": "GCF_024753255.1", "organism": "Massilia agri", "title": "Massilia agri", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University Of Tasmania, Tasmania Inst Agriculture", "publication": [ {} ], "properties": { "assembly_accession": "GCF_024753255.1", "bioproject": "PRJNA224116", "biosample": "SAMN30252722", "wgs_master": "JANUHA000000000.1", "refseq_category": "reference genome", "taxid": "1886785", "species_taxid": "1886785", "organism_name": "Massilia agri", "infraspecific_name": "strain=JCM 31661", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/28", "asm_name": "ASM2475325v1", "asm_submitter": "University Of Tasmania, Tasmania Inst Agriculture", "gbrs_paired_asm": "GCA_024753255.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/753/255/GCF_024753255.1_ASM2475325v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5500879", "genome_size_ungapped": "5500879", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "67", "contig_count": "67", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_024753255.1-RS_2024_08_18", "annotation_date": "2024-08-18", "total_gene_count": "5033", "protein_coding_gene_count": "4930", "non_coding_gene_count": "72", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-28", "dateModified": "2022-08-28", "datePublished": "2022-08-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Massilia agri" ], "sample_taxid": [ "1886785" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Nepal: Belbari, Morang" ], "sample_host_location_id": [], "data_size": "1.509 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5500879", "Number of Sequences": "67", "Longest Sequences (bp)": "661188", "N50 (bp)": "255150", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.9", "Number of CDSs": "4957", "Average Protein Length": "335.9", "Coding Ratio (%)": "90.8", "Number of rRNAs": "1", "Number of tRNAs": "73", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Massilia agri", "strain": "strain=JCM 31661", "accession": "GCA_024753255.1", "taxid": 1886785, "species_taxid": 1886785, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1809, "total_fragments": 1810, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Massilia alkalitolerans", "strain": "strain=DSM 17462", "accession": "GCA_000427785.1", "taxid": 286638, "species_taxid": 286638, "relation_to_type": "type", "validated": true, "ani": 87.6997, "matched_fragments": 1440, "total_fragments": 1810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia yuzhufengensis", "strain": "strain=CGMCC 1.12041", "accession": "GCA_900112225.1", "taxid": 1164594, "species_taxid": 1164594, "relation_to_type": "type", "validated": true, "ani": 86.8097, "matched_fragments": 1358, "total_fragments": 1810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia aromaticivorans", "strain": "strain=ML15P13", "accession": "GCA_013003915.1", "taxid": 2725995, "species_taxid": 2725995, "relation_to_type": "type", "validated": true, "ani": 86.1601, "matched_fragments": 1335, "total_fragments": 1810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia niastensis", "strain": "strain=DSM 21313", "accession": "GCA_000382345.1", "taxid": 544911, "species_taxid": 544911, "relation_to_type": "type", "validated": true, "ani": 85.2064, "matched_fragments": 1279, "total_fragments": 1810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia oculi", "strain": "strain=CCUG 43427", "accession": "GCA_003143515.1", "taxid": 945844, "species_taxid": 945844, "relation_to_type": "type", "validated": true, "ani": 84.4759, "matched_fragments": 1253, "total_fragments": 1810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia arenae", "strain": "strain=GEM5", "accession": "GCA_008014745.1", "taxid": 2603288, "species_taxid": 2603288, "relation_to_type": "type", "validated": true, "ani": 84.0899, "matched_fragments": 1254, "total_fragments": 1810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia norwichensis", "strain": "strain=LMG 28164", "accession": "GCA_024753245.1", "taxid": 1442366, "species_taxid": 1442366, "relation_to_type": "type", "validated": true, "ani": 83.4283, "matched_fragments": 1201, "total_fragments": 1810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia forsythiae", "strain": "strain=GN2-R2", "accession": "GCA_012849555.1", "taxid": 2728020, "species_taxid": 2728020, "relation_to_type": "type", "validated": true, "ani": 82.6939, "matched_fragments": 1164, "total_fragments": 1810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia putida", "strain": "strain=6NM-7", "accession": "GCA_001941825.1", "taxid": 1141883, "species_taxid": 1141883, "relation_to_type": "type", "validated": true, "ani": 81.8015, "matched_fragments": 1141, "total_fragments": 1810, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": 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yuzhufengensis", "ani": 86.817, "matched_fragments": 1357, "total_fragments": 1810, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018119405.1", "gtdb_species": "s__Massilia sp018119405", "ani": 85.8823, "matched_fragments": 1275, "total_fragments": 1810, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018119395.1", "gtdb_species": "s__Massilia sp018119395", "ani": 85.8802, 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