{ "type": "genome", "identifier": "GCF_024761905.1", "organism": "Streptomyces ginkgonis", "title": "Streptomyces ginkgonis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Northwest A&F Unversity", "publication": [ {} ], "properties": { "assembly_accession": "GCF_024761905.1", "bioproject": "PRJNA224116", "biosample": "SAMN05271463", "wgs_master": "MAUN00000000.1", "refseq_category": "reference genome", "taxid": "1812259", "species_taxid": "1812259", "organism_name": "Streptomyces ginkgonis", "infraspecific_name": "strain=KM-1-2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/29", "asm_name": "ASM2476190v1", "asm_submitter": "Northwest A&F Unversity", "gbrs_paired_asm": "GCA_024761905.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/761/905/GCF_024761905.1_ASM2476190v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5837284", "genome_size_ungapped": "5837284", "gc_percent": "73.000000", "replicon_count": "0", "scaffold_count": "26", "contig_count": "26", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_024761905.1-RS_2024_08_02", "annotation_date": "2024-08-02", "total_gene_count": "5327", "protein_coding_gene_count": "5189", "non_coding_gene_count": "70", "pubmed_id": "29756439" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-29", "dateModified": "2022-08-29", "datePublished": "2022-08-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces ginkgonis" ], "sample_taxid": [ "1812259" ], "sample_host_organism": [ "Ginkgo" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: 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"strain=PL19", "accession": "GCA_900114215.1", "taxid": 1520580, "species_taxid": 1520580, "relation_to_type": "type", "validated": true, "ani": 80.4734, "matched_fragments": 957, "total_fragments": 1935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces taklimakanensis", "strain": "strain=TRM43335", "accession": "GCA_009709575.1", "taxid": 2569853, "species_taxid": 2569853, "relation_to_type": "type", "validated": true, "ani": 80.3209, "matched_fragments": 935, "total_fragments": 1935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces palmae", "strain": "strain=JCM 31289", "accession": "GCA_004684805.1", "taxid": 1701085, "species_taxid": 1701085, "relation_to_type": "type", "validated": true, "ani": 80.2704, "matched_fragments": 841, "total_fragments": 1935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lichenis", "strain": "strain=LCR6-01", "accession": "GCA_023218175.1", 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