{
    "type": "genome",
    "identifier": "GCF_024793945.1",
    "organism": "Emticicia fluvialis",
    "title": "Emticicia fluvialis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Korea Research Institute of Bioscience and Biotechnology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_024793945.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN30450538",
        "wgs_master": "JANUSD000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2974474",
        "species_taxid": "2974474",
        "organism_name": "Emticicia fluvialis",
        "infraspecific_name": "strain=BHSR1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/08/30",
        "asm_name": "ASM2479394v1",
        "asm_submitter": "Korea Research Institute of Bioscience and Biotechnology",
        "gbrs_paired_asm": "GCA_024793945.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/793/945/GCF_024793945.1_ASM2479394v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5074109",
        "genome_size_ungapped": "5073909",
        "gc_percent": "42.000000",
        "replicon_count": "0",
        "scaffold_count": "38",
        "contig_count": "38",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_024793945.1-RS_2024_10_11",
        "annotation_date": "2024-10-11",
        "total_gene_count": "4306",
        "protein_coding_gene_count": "4246",
        "non_coding_gene_count": "41",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-08-30",
    "dateModified": "2022-08-30",
    "datePublished": "2022-08-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Emticicia fluvialis"
        ],
        "sample_taxid": [
            "2974474"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea: Yecheon"
        ],
        "sample_host_location_id": [],
        "data_size": "1.436 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5074109",
        "Number of Sequences": "38",
        "Longest Sequences (bp)": "441652",
        "N50 (bp)": "263660",
        "Gap Ratio (%)": "0.003942",
        "GCcontent (%)": "41.9",
        "Number of CDSs": "4244",
        "Average Protein Length": "346.7",
        "Coding Ratio (%)": "87.0",
        "Number of rRNAs": "3",
        "Number of tRNAs": "38",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Emticicia agri",
                "strain": "strain=17J42-9",
                "accession": "GCA_004168285.1",
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                "species_taxid": 2492393,
                "relation_to_type": "type",
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                "total_fragments": 1673,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Emticicia aquatilis",
                "strain": "strain=CGMCC 1.15958",
                "accession": "GCA_014644295.1",
                "taxid": 1537369,
                "species_taxid": 1537369,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 185,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Emticicia aquatica",
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                "accession": "GCA_923079645.1",
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                "species_taxid": 1681835,
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                "ani": 76.2311,
                "matched_fragments": 167,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lacihabitans soyangensis",
                "strain": "strain=KCTC23259",
                "accession": "GCA_024343775.1",
                "taxid": 869394,
                "species_taxid": 869394,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9814,
                "matched_fragments": 64,
                "total_fragments": 1673,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Runella slithyformis",
                "strain": "strain=DSM 19594",
                "accession": "GCA_000218895.1",
                "taxid": 106,
                "species_taxid": 106,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5391,
                "matched_fragments": 59,
                "total_fragments": 1673,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002855535.1",
                "gtdb_species": "s__Emticicia sp002855535",
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                "matched_fragments": 1541,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Emticicia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_004168285.1",
                "gtdb_species": "s__Emticicia sp004168285",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Emticicia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013912375.1",
                "gtdb_species": "s__Emticicia sp013912375",
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                "matched_fragments": 662,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Emticicia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003418935.1",
                "gtdb_species": "s__Emticicia sp003418935",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Emticicia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014644295.1",
                "gtdb_species": "s__Emticicia aquatilis",
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                "total_fragments": 1673,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Emticicia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009905725.1",
                "gtdb_species": "s__Leadbetterella sp002483125",
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                "matched_fragments": 90,
                "total_fragments": 1673,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Leadbetterella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.11",
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                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
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            },
            {
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.49,
        "cell_length": 0.451,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": 29.75,
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        "genome_size": 5220360.75,
        "gc_content": 35.584,
        "coding_genes": 4256.667,
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        "gram_stain": 0.0,
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        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
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        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
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        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Emticicia",
        "fluvialis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}