{ "tc_result": [ { "organism_name": "Bradyrhizobium betae", "strain": "strain=CECT 5829", "accession": "GCA_024806875.1", "taxid": 244734, "species_taxid": 244734, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2430, "total_fragments": 2431, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bradyrhizobium betae", "strain": "strain=PL7HG1", "accession": "GCA_008932115.1", "taxid": 244734, "species_taxid": 244734, "relation_to_type": "type", "validated": true, "ani": 99.9981, "matched_fragments": 2431, "total_fragments": 2431, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bradyrhizobium cosmicum", "strain": "strain=58S1", "accession": "GCA_007290395.1", "taxid": 1404864, "species_taxid": 1404864, "relation_to_type": "type", "validated": true, "ani": 94.11, "matched_fragments": 1962, "total_fragments": 2431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium japonicum", "strain": "strain=NBRC 14783", "accession": "GCA_006539645.1", "taxid": 375, "species_taxid": 375, "relation_to_type": "type", "validated": true, "ani": 89.6898, "matched_fragments": 1816, "total_fragments": 2431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium diazoefficiens", "strain": "strain=USDA 110", "accession": "GCA_001642675.1", "taxid": 1355477, "species_taxid": 1355477, "relation_to_type": "type", "validated": true, "ani": 89.6836, "matched_fragments": 1838, "total_fragments": 2431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium japonicum", "strain": "strain=USDA 6", "accession": "GCA_000472985.1", "taxid": 375, "species_taxid": 375, "relation_to_type": "type", "validated": true, "ani": 89.6652, "matched_fragments": 1838, "total_fragments": 2431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium diazoefficiens", "strain": "strain=USDA110", "accession": "GCA_000011365.1", "taxid": 1355477, "species_taxid": 1355477, "relation_to_type": "type", "validated": true, "ani": 89.5937, "matched_fragments": 1841, "total_fragments": 2431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium niftali", "strain": "strain=CNPSo 3448", "accession": "GCA_004571025.1", "taxid": 2560055, "species_taxid": 2560055, "relation_to_type": "type", "validated": true, "ani": 89.479, "matched_fragments": 1784, "total_fragments": 2431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium symbiodeficiens", "strain": "strain=85S1MB", "accession": "GCA_002266465.2", "taxid": 1404367, "species_taxid": 1404367, "relation_to_type": "type", "validated": true, "ani": 89.018, "matched_fragments": 1779, "total_fragments": 2431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium amphicarpaeae", "strain": "strain=39S1MB", "accession": "GCA_002266435.2", "taxid": 1404768, "species_taxid": 1404768, "relation_to_type": "type", "validated": true, "ani": 88.9195, "matched_fragments": 1841, "total_fragments": 2431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium cajani", "strain": "strain=1010", "accession": "GCA_009759665.1", "taxid": 1928661, "species_taxid": 1928661, "relation_to_type": "type", "validated": true, "ani": 88.8693, "matched_fragments": 1761, "total_fragments": 2431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium nitroreducens", "strain": "strain=TSA1", "accession": "GCA_002776695.1", "taxid": 709803, "species_taxid": 709803, "relation_to_type": "type", "validated": true, "ani": 88.7661, "matched_fragments": 1839, "total_fragments": 2431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium daqingense", "strain": "strain=CCBAU 15774", "accession": "GCA_021044685.1", "taxid": 993502, "species_taxid": 993502, "relation_to_type": "type", "validated": true, "ani": 87.9921, "matched_fragments": 1699, "total_fragments": 2431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium viridifuturi", "strain": "strain=SEMIA 690", "accession": "GCA_001238275.1", "taxid": 1654716, "species_taxid": 1654716, "relation_to_type": "type", "validated": true, "ani": 82.9581, "matched_fragments": 1399, "total_fragments": 2431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium acaciae", "strain": "strain=10BB", "accession": "GCA_020889785.1", "taxid": 2683706, "species_taxid": 2683706, "relation_to_type": "type", "validated": true, "ani": 82.8045, "matched_fragments": 1322, "total_fragments": 2431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter oerskovii", "strain": "strain=CCM 7435", "accession": "GCA_018390555.1", "taxid": 459519, "species_taxid": 459519, "relation_to_type": "type", "validated": true, "ani": 78.0446, "matched_fragments": 514, "total_fragments": 2431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium helmanticense", "strain": "strain=CSLC115N", "accession": "GCA_003034915.1", "taxid": 1776423, "species_taxid": 1776423, "relation_to_type": "type", "validated": true, "ani": 77.2091, "matched_fragments": 362, "total_fragments": 2431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimarina pelagi", "strain": "strain=HTCC2506", "accession": "GCA_000153705.1", "taxid": 217511, "species_taxid": 217511, "relation_to_type": "type", "validated": true, "ani": 76.2602, "matched_fragments": 153, "total_fragments": 2431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimarina pelagi", "strain": "strain=DSM 15513", "accession": "GCA_001463845.1", "taxid": 217511, "species_taxid": 217511, "relation_to_type": "type", "validated": true, "ani": 76.1886, "matched_fragments": 151, "total_fragments": 2431, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_008932115.1", "gtdb_species": "s__Bradyrhizobium betae", "ani": 99.9981, "matched_fragments": 2431, "total_fragments": 2431, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_007290395.1", "gtdb_species": "s__Bradyrhizobium cosmicum", "ani": 94.1, "matched_fragments": 1963, "total_fragments": 2431, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.90", "min_intra_species_ani": "97.90", 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000011365.1", "gtdb_species": "s__Bradyrhizobium diazoefficiens", "ani": 89.5979, "matched_fragments": 1840, "total_fragments": 2431, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.15", "min_intra_species_ani": "98.13", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.84", "num_clustered_genomes": 23, "status": "-" }, { "accession": "GCF_004571025.1", "gtdb_species": "s__Bradyrhizobium niftali", "ani": 89.4905, "matched_fragments": 1783, "total_fragments": 2431, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.00", "min_intra_species_ani": "95.49", 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016839165.1", "gtdb_species": "s__Bradyrhizobium sp003020075", "ani": 83.0808, "matched_fragments": 1398, "total_fragments": 2431, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.93", "min_intra_species_ani": "99.86", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.95", "num_clustered_genomes": 16, "status": "-" }, { "accession": "GCF_000314735.2", "gtdb_species": "s__Afipia felis", "ani": 79.9344, "matched_fragments": 588, "total_fragments": 2431, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Afipia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.60", "min_intra_species_ani": "95.79", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.87", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_017308135.1", "gtdb_species": "s__Tagaea sp017308135", "ani": 77.5282, "matched_fragments": 297, "total_fragments": 2431, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__CACIAM-22H2;f__CACIAM-22H2;g__Tagaea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.31", "min_intra_species_ani": "97.31", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" } ] }