{ "type": "genome", "identifier": "GCF_024807225.1", "organism": "Chryseobacterium ginsenosidimutans", "title": "Chryseobacterium ginsenosidimutans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_024807225.1", "bioproject": "PRJNA224116", "biosample": "SAMN18252035", "wgs_master": "JANUCO000000000.1", "refseq_category": "na", "taxid": "687846", "species_taxid": "687846", "organism_name": "Chryseobacterium ginsenosidimutans", "infraspecific_name": "strain=THG 15", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/31", "asm_name": "ASM2480722v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_024807225.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/807/225/GCF_024807225.1_ASM2480722v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4716183", "genome_size_ungapped": "4716183", "gc_percent": "34.500000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_024807225.1-RS_2024_09_16", "annotation_date": "2024-09-16", "total_gene_count": "4484", "protein_coding_gene_count": "4141", "non_coding_gene_count": "103", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-31", "dateModified": "2022-08-31", "datePublished": "2022-08-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium ginsenosidimutans" ], "sample_taxid": [ "687846" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Milaca, MN" ], "sample_host_location_id": [], "data_size": "1.304 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4716183", "Number of Sequences": "1", "Longest Sequences (bp)": "4716183", "N50 (bp)": "4716183", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.7", "Number of CDSs": "4496", "Average Protein Length": "299.1", "Coding Ratio (%)": "85.5", "Number of rRNAs": "18", "Number of tRNAs": "82", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium ginsenosidimutans", "strain": "strain=THG 15", "accession": "GCA_024807225.1", "taxid": 687846, "species_taxid": 687846, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1571, "total_fragments": 1572, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chryseobacterium wanjuense", "strain": "strain=DSM 17724", "accession": "GCA_900111495.1", "taxid": 356305, "species_taxid": 356305, "relation_to_type": "type", "validated": true, "ani": 83.6682, "matched_fragments": 1035, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium soldanellicola", "strain": "strain=DSM 17072", "accession": "GCA_900100115.1", "taxid": 311333, "species_taxid": 311333, "relation_to_type": "type", "validated": true, "ani": 83.2594, "matched_fragments": 966, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium limigenitum", "strain": "strain=SUR2", "accession": "GCA_900114875.1", "taxid": 1612149, "species_taxid": 1612149, "relation_to_type": "type", "validated": true, "ani": 83.1651, "matched_fragments": 991, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium arachidis", "strain": "strain=DSM 27619", "accession": "GCA_900129245.1", "taxid": 1416778, "species_taxid": 1416778, "relation_to_type": "type", "validated": true, "ani": 83.1229, "matched_fragments": 1038, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium glaciei", "strain": "strain=IHBB 10212", "accession": "GCA_001648155.1", "taxid": 1685010, "species_taxid": 1685010, "relation_to_type": "type", "validated": true, "ani": 83.0463, "matched_fragments": 1042, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gwangjuense", "strain": "strain=THG-A18", "accession": "GCA_021311115.1", "taxid": 1069980, "species_taxid": 1069980, "relation_to_type": "type", "validated": true, "ani": 82.5382, "matched_fragments": 797, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium tagetis", "strain": "strain=RG1", "accession": "GCA_016735585.2", "taxid": 2801334, "species_taxid": 2801334, "relation_to_type": "type", "validated": true, "ani": 82.2944, "matched_fragments": 910, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gambrini", "strain": "strain=DSM 18014", "accession": "GCA_900156825.1", "taxid": 373672, "species_taxid": 373672, "relation_to_type": "type", "validated": true, "ani": 82.2859, "matched_fragments": 974, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium mucoviscidosis", "strain": "strain=VT16-26", "accession": "GCA_002177115.1", "taxid": 1945581, "species_taxid": 1945581, "relation_to_type": "type", "validated": true, "ani": 82.2244, "matched_fragments": 952, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium polytrichastri", "strain": "strain=DSM 26899", "accession": "GCA_900142445.1", "taxid": 1302687, "species_taxid": 1302687, "relation_to_type": "type", "validated": true, "ani": 81.923, "matched_fragments": 952, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium schmidteae", "strain": "strain=Marseille-P9602", "accession": "GCA_903166575.1", "taxid": 2730404, "species_taxid": 2730404, "relation_to_type": "type", "validated": true, "ani": 81.1522, "matched_fragments": 800, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium taeanense", "strain": "strain=DSM 17071", "accession": "GCA_900099685.1", "taxid": 311334, "species_taxid": 311334, "relation_to_type": "type", "validated": true, "ani": 81.1374, "matched_fragments": 810, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium luteum", "strain": "strain=DSM 18605", "accession": "GCA_000737785.1", "taxid": 421531, "species_taxid": 421531, "relation_to_type": "type", "validated": true, "ani": 80.826, "matched_fragments": 741, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium caseinilyticum", "strain": "strain=GCR10", "accession": "GCA_014837145.1", "taxid": 2771428, "species_taxid": 2771428, "relation_to_type": "type", "validated": true, "ani": 79.7666, "matched_fragments": 670, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium fistulae", "strain": "strain=CECT 9393", "accession": "GCA_902729325.1", "taxid": 2675058, "species_taxid": 2675058, "relation_to_type": "type", "validated": true, "ani": 79.2944, "matched_fragments": 523, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000799195.1", "gtdb_species": "s__Chryseobacterium sp000799195", "ani": 88.6412, "matched_fragments": 1172, "total_fragments": 1572, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001425355.1", "gtdb_species": "s__Chryseobacterium sp001425355", "ani": 83.7359, "matched_fragments": 1027, "total_fragments": 1572, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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"status": "-" }, { "accession": "GCF_003815655.1", "gtdb_species": "s__Chryseobacterium sp003815655", "ani": 83.2002, "matched_fragments": 993, "total_fragments": 1572, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900114875.1", "gtdb_species": "s__Chryseobacterium limigenitum", "ani": 83.1502, "matched_fragments": 993, "total_fragments": 1572, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": 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