{
    "type": "genome",
    "identifier": "GCF_024834045.1",
    "organism": "Neisseria montereyensis",
    "title": "Neisseria montereyensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "US FDA",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_024834045.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN30428199",
        "wgs_master": "JANUXW000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2973938",
        "species_taxid": "2973938",
        "organism_name": "Neisseria montereyensis",
        "infraspecific_name": "strain=CSL10203-ORH2",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/09/01",
        "asm_name": "ASM2483404v1",
        "asm_submitter": "US FDA",
        "gbrs_paired_asm": "GCA_024834045.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/834/045/GCF_024834045.1_ASM2483404v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2310535",
        "genome_size_ungapped": "2310535",
        "gc_percent": "46.000000",
        "replicon_count": "0",
        "scaffold_count": "22",
        "contig_count": "22",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_024834045.1-RS_2024_07_01",
        "annotation_date": "2024-07-01",
        "total_gene_count": "2158",
        "protein_coding_gene_count": "2077",
        "non_coding_gene_count": "57",
        "pubmed_id": "37354372"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-09-01",
    "dateModified": "2022-09-01",
    "datePublished": "2022-09-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Neisseria montereyensis"
        ],
        "sample_taxid": [
            "2973938"
        ],
        "sample_host_organism": [
            "Zalophus californianus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: California"
        ],
        "sample_host_location_id": [],
        "data_size": "0.649 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2310535",
        "Number of Sequences": "22",
        "Longest Sequences (bp)": "513556",
        "N50 (bp)": "360099",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "45.8",
        "Number of CDSs": "2027",
        "Average Protein Length": "316.0",
        "Coding Ratio (%)": "83.2",
        "Number of rRNAs": "3",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Neisseria zalophi",
                "strain": "strain=ATCC BAA-2455",
                "accession": "GCA_008807015.1",
                "taxid": 640030,
                "species_taxid": 640030,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.9457,
                "matched_fragments": 641,
                "total_fragments": 760,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neisseria zoodegmatis",
                "strain": "strain=NCTC12230",
                "accession": "GCA_900187305.1",
                "taxid": 326523,
                "species_taxid": 326523,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7061,
                "matched_fragments": 385,
                "total_fragments": 760,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neisseria zoodegmatis",
                "strain": "strain=DSM 21643",
                "accession": "GCA_002108575.1",
                "taxid": 326523,
                "species_taxid": 326523,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.589,
                "matched_fragments": 391,
                "total_fragments": 760,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neisseria dumasiana",
                "strain": "strain=93087",
                "accession": "GCA_002108505.1",
                "taxid": 1931275,
                "species_taxid": 1931275,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.391,
                "matched_fragments": 392,
                "total_fragments": 760,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neisseria dumasiana",
                "strain": "strain=LMG 30012",
                "accession": "GCA_022870885.1",
                "taxid": 1931275,
                "species_taxid": 1931275,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3645,
                "matched_fragments": 404,
                "total_fragments": 760,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neisseria animaloris",
                "strain": "strain=DSM 21642",
                "accession": "GCA_002108605.1",
                "taxid": 326522,
                "species_taxid": 326522,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2986,
                "matched_fragments": 338,
                "total_fragments": 760,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neisseria animaloris",
                "strain": "strain=NCTC12228",
                "accession": "GCA_900637855.1",
                "taxid": 326522,
                "species_taxid": 326522,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2692,
                "matched_fragments": 335,
                "total_fragments": 760,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neisseria weaveri",
                "strain": "strain=NCTC12742",
                "accession": "GCA_900638685.1",
                "taxid": 28091,
                "species_taxid": 28091,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8674,
                "matched_fragments": 275,
                "total_fragments": 760,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neisseria weaveri",
                "strain": "strain=LMG 5135",
                "accession": "GCA_000224255.2",
                "taxid": 28091,
                "species_taxid": 28091,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7531,
                "matched_fragments": 277,
                "total_fragments": 760,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Uruburuella testudinis",
                "strain": "strain=CCUG 63373m",
                "accession": "GCA_022870865.1",
                "taxid": 1282863,
                "species_taxid": 1282863,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1973,
                "matched_fragments": 323,
                "total_fragments": 760,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Uruburuella suis",
                "strain": "strain=DSM 17474",
                "accession": "GCA_004341385.1",
                "taxid": 252130,
                "species_taxid": 252130,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9871,
                "matched_fragments": 270,
                "total_fragments": 760,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Uruburuella suis",
                "strain": "strain=1258/02",
                "accession": "GCA_022870845.1",
                "taxid": 252130,
                "species_taxid": 252130,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9367,
                "matched_fragments": 277,
                "total_fragments": 760,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neisseria perflava",
                "strain": "strain=CCUG 17915",
                "accession": "GCA_023472875.1",
                "taxid": 33053,
                "species_taxid": 33053,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.8833,
                "matched_fragments": 212,
                "total_fragments": 760,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kingella potus",
                "strain": "strain=NCTC13336",
                "accession": "GCA_900451175.1",
                "taxid": 265175,
                "species_taxid": 265175,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7854,
                "matched_fragments": 164,
                "total_fragments": 760,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neisseria elongata",
                "strain": "strain=NCTC10660",
                "accession": "GCA_900453895.1",
                "taxid": 495,
                "species_taxid": 495,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7304,
                "matched_fragments": 200,
                "total_fragments": 760,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neisseria elongata subsp. elongata",
                "strain": "strain=ATCC 25295",
                "accession": "GCA_900113545.1",
                "taxid": 214482,
                "species_taxid": 495,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6623,
                "matched_fragments": 202,
                "total_fragments": 760,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_008807015.1",
                "gtdb_species": "s__Neisseria zalophi",
                "ani": 90.9104,
                "matched_fragments": 642,
                "total_fragments": 760,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900187305.1",
                "gtdb_species": "s__Neisseria zoodegmatis",
                "ani": 79.6614,
                "matched_fragments": 388,
                "total_fragments": 760,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.30",
                "min_intra_species_ani": "96.60",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_002108505.1",
                "gtdb_species": "s__Neisseria dumasiana",
                "ani": 79.3892,
                "matched_fragments": 391,
                "total_fragments": 760,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.54",
                "min_intra_species_ani": "97.26",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_900637855.1",
                "gtdb_species": "s__Neisseria animaloris",
                "ani": 79.2842,
                "matched_fragments": 333,
                "total_fragments": 760,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.59",
                "min_intra_species_ani": "98.11",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_014055005.1",
                "gtdb_species": "s__Neisseria dentiae",
                "ani": 78.8577,
                "matched_fragments": 358,
                "total_fragments": 760,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900638685.1",
                "gtdb_species": "s__Neisseria weaveri",
                "ani": 78.8416,
                "matched_fragments": 274,
                "total_fragments": 760,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.19",
                "min_intra_species_ani": "98.86",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_004341385.1",
                "gtdb_species": "s__Neisseria suis",
                "ani": 78.0232,
                "matched_fragments": 267,
                "total_fragments": 760,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.29",
                "min_intra_species_ani": "97.17",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_005886145.1",
                "gtdb_species": "s__Neisseria sp000090875",
                "ani": 77.9847,
                "matched_fragments": 211,
                "total_fragments": 760,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.69",
                "min_intra_species_ani": "97.41",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_003044565.1",
                "gtdb_species": "s__Neisseria sicca_A",
                "ani": 77.9831,
                "matched_fragments": 196,
                "total_fragments": 760,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.01",
                "min_intra_species_ani": "95.27",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001618015.1",
                "gtdb_species": "s__Neisseria flavescens_B",
                "ani": 77.9702,
                "matched_fragments": 216,
                "total_fragments": 760,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria",
                "ani_circumscription_radius": 95.1594,
                "mean_intra_species_ani": "95.75",
                "min_intra_species_ani": "95.73",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_003045025.1",
                "gtdb_species": "s__Neisseria subflava_A",
                "ani": 77.953,
                "matched_fragments": 211,
                "total_fragments": 760,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria",
                "ani_circumscription_radius": 95.3115,
                "mean_intra_species_ani": "96.25",
                "min_intra_species_ani": "95.58",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 14,
                "status": "-"
            },
            {
                "accession": "GCF_001027865.1",
                "gtdb_species": "s__Neisseria arctica",
                "ani": 77.6004,
                "matched_fragments": 213,
                "total_fragments": 760,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.086,
        "cell_length": -0.056,
        "doubling_h": -0.218,
        "growth_tmp": 35.104,
        "optimum_tmp": 32.796,
        "optimum_ph": 7.0,
        "genome_size": 2320088.203,
        "gc_content": 51.719,
        "coding_genes": 2137.057,
        "rRNA16S_genes": 4.014,
        "tRNA_genes": 58.021,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.043,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.956,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.117,
        "coccus_cell_shape": 0.882,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Neisseria",
        "montereyensis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}