{ "type": "genome", "identifier": "GCF_025002605.1", "organism": "Enterobacter sichuanensis", "title": "Enterobacter sichuanensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SRIPAT SINGH COLLEGE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025002605.1", "bioproject": "PRJNA224116", "biosample": "SAMN29963419", "wgs_master": "JANPXR000000000.1", "refseq_category": "na", "taxid": "2071710", "species_taxid": "2071710", "organism_name": "Enterobacter sichuanensis", "infraspecific_name": "strain=WCHECL1597", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/07", "asm_name": "ASM2500260v1", "asm_submitter": "SRIPAT SINGH COLLEGE", "gbrs_paired_asm": "GCA_025002605.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/002/605/GCF_025002605.1_ASM2500260v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4980794", "genome_size_ungapped": "4980794", "gc_percent": "55.000000", "replicon_count": "0", "scaffold_count": "47", "contig_count": "47", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025002605.1-RS_2024_09_20", "annotation_date": "2024-09-20", "total_gene_count": "4901", "protein_coding_gene_count": "4741", "non_coding_gene_count": "90", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-07", "dateModified": "2022-09-07", "datePublished": "2022-09-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterobacter sichuanensis" ], "sample_taxid": [ "2071710" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India: West Bengal, Nadia, Chakdah, Parari village" ], "sample_host_location_id": [], "data_size": "1.413 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4980794", "Number of Sequences": "47", "Longest Sequences (bp)": "672277", "N50 (bp)": "345635", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.2", "Number of CDSs": "4786", "Average Protein Length": "308.4", "Coding Ratio (%)": "88.9", "Number of rRNAs": "2", "Number of tRNAs": "76", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1642, 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95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_001729805.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 91.8656, "matched_fragments": 1333, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter asburiae", "strain": "strain=ATCC 35953", "accession": "GCA_001521715.1", "taxid": 61645, "species_taxid": 61645, "relation_to_type": "type", "validated": true, "ani": 91.7422, "matched_fragments": 1289, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter asburiae", "strain": "strain=FDAARGOS_892", "accession": "GCA_016027695.1", "taxid": 61645, "species_taxid": 61645, "relation_to_type": "type", "validated": true, "ani": 91.6595, "matched_fragments": 1292, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter chengduensis", "strain": "strain=WCHECl-C4 = WCHECh050004", "accession": "GCA_001984825.2", "taxid": 2494701, "species_taxid": 2494701, "relation_to_type": "type", "validated": true, "ani": 90.9883, "matched_fragments": 1315, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter bugandensis", "strain": "", "accession": "GCA_900324475.1", "taxid": 881260, "species_taxid": 881260, "relation_to_type": "type", "validated": true, "ani": 90.317, "matched_fragments": 1317, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter bugandensis", "strain": "strain=FDAARGOS 1427", "accession": "GCA_019046905.1", "taxid": 881260, "species_taxid": 881260, "relation_to_type": "type", "validated": true, "ani": 90.295, "matched_fragments": 1314, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter cloacae", "strain": "strain=ATCC 13047", "accession": "GCA_000755525.1", "taxid": 550, "species_taxid": 550, "relation_to_type": "type", "validated": true, "ani": 89.3927, "matched_fragments": 1360, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter cloacae", "strain": "strain=DSM 30054", "accession": "GCA_013376815.1", "taxid": 550, "species_taxid": 550, "relation_to_type": "type", "validated": true, "ani": 89.3702, "matched_fragments": 1350, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter cloacae", "strain": "strain=FDAARGOS 1431", "accession": "GCA_019047105.1", "taxid": 550, "species_taxid": 550, "relation_to_type": "type", "validated": true, "ani": 89.3642, "matched_fragments": 1374, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter quasimori", "strain": "strain=090044", "accession": "GCA_003964905.1", "taxid": 2838947, "species_taxid": 2838947, "relation_to_type": "type", "validated": true, "ani": 89.2897, "matched_fragments": 1305, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter cloacae", "strain": "strain=DSM 30054", "accession": "GCA_021469225.1", "taxid": 550, "species_taxid": 550, "relation_to_type": "type", "validated": true, "ani": 89.2871, "matched_fragments": 1323, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter mori", "strain": "strain=LMG 25706", "accession": "GCA_000211415.1", "taxid": 539813, "species_taxid": 539813, "relation_to_type": "type", "validated": true, "ani": 88.9586, "matched_fragments": 1273, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 88.2701, "matched_fragments": 1234, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei", "strain": "strain=FDAARGOS 1433", "accession": "GCA_019048245.1", "taxid": 158836, "species_taxid": 158836, "relation_to_type": "suspected-type", "validated": true, "ani": 87.5298, "matched_fragments": 1217, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002939185.1", "gtdb_species": "s__Enterobacter sichuanensis", "ani": 98.1069, "matched_fragments": 1392, "total_fragments": 1642, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.38", "min_intra_species_ani": "97.99", "mean_intra_species_af": 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