{ "type": "genome", "identifier": "GCF_025136295.1", "organism": "Aestuariispira ectoiniformans", "title": "Aestuariispira ectoiniformans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea Research Institute of bioscience and Biotechnology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025136295.1", "bioproject": "PRJNA224116", "biosample": "SAMN16364695", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2775080", "species_taxid": "2775080", "organism_name": "Aestuariispira ectoiniformans", "infraspecific_name": "strain=SWCN16", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/21", "asm_name": "ASM2513629v1", "asm_submitter": "Korea Research Institute of bioscience and Biotechnology", "gbrs_paired_asm": "GCA_025136295.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/136/295/GCF_025136295.1_ASM2513629v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4361962", "genome_size_ungapped": "4361962", "gc_percent": "57.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025136295.1-RS_2024_09_24", "annotation_date": "2024-09-24", "total_gene_count": "4126", "protein_coding_gene_count": "4051", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-21", "dateModified": "2021-01-21", "datePublished": "2021-01-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Aestuariispira ectoiniformans" ], "sample_taxid": [ "2775080" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Buan-gun" ], "sample_host_location_id": [], "data_size": "1.228 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4361962", "Number of Sequences": "1", "Longest Sequences (bp)": "4361962", "N50 (bp)": "4361962", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.1", "Number of CDSs": "4110", "Average Protein Length": "319.3", "Coding Ratio (%)": "90.3", "Number of rRNAs": "9", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aestuariispira ectoiniformans", "strain": "strain=SWCN16", "accession": "GCA_025136295.1", "taxid": 2775080, "species_taxid": 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"organism_name": "Zavarzinia aquatilis", "strain": "strain=HR-AS", "accession": "GCA_003173035.1", "taxid": 2211142, "species_taxid": 2211142, "relation_to_type": "type", "validated": true, "ani": 76.1744, "matched_fragments": 81, "total_fragments": 1453, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niveispirillum irakense", "strain": "strain=DSM 11586", "accession": "GCA_000429645.1", "taxid": 34011, "species_taxid": 34011, "relation_to_type": "type", "validated": true, "ani": 75.9844, "matched_fragments": 98, "total_fragments": 1453, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Skermanella aerolata", "strain": "strain=5416T-32", "accession": "GCA_000936425.1", "taxid": 393310, "species_taxid": 393310, "relation_to_type": "type", "validated": true, "ani": 75.9812, "matched_fragments": 97, "total_fragments": 1453, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassospira mesophila", "strain": "strain=JCM 18969", "accession": "GCA_002115755.1", "taxid": 1293891, "species_taxid": 1293891, "relation_to_type": "type", "validated": true, "ani": 75.91, "matched_fragments": 51, "total_fragments": 1453, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus denitrificans", "strain": "strain=NBRC 102528", "accession": "GCA_007989485.1", "taxid": 266, "species_taxid": 266, "relation_to_type": "type", "validated": true, "ani": 75.9047, "matched_fragments": 73, "total_fragments": 1453, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus limosus", "strain": "strain=JCM 17370", "accession": "GCA_009711185.1", "taxid": 913252, "species_taxid": 913252, "relation_to_type": "type", "validated": true, "ani": 75.8504, "matched_fragments": 59, "total_fragments": 1453, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus halophilus", "strain": "strain=CGMCC 1.6117", "accession": "GCA_900111785.1", "taxid": 376733, 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