{
    "type": "genome",
    "identifier": "GCF_025146135.1",
    "organism": "Anaerotruncus colihominis",
    "title": "Anaerotruncus colihominis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Stanford University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_025146135.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN20222640",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "169435",
        "species_taxid": "169435",
        "organism_name": "Anaerotruncus colihominis",
        "infraspecific_name": "strain=DSM 17241",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/09/12",
        "asm_name": "ASM2514613v1",
        "asm_submitter": "Stanford University",
        "gbrs_paired_asm": "GCA_025146135.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/146/135/GCF_025146135.1_ASM2514613v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3563916",
        "genome_size_ungapped": "3563916",
        "gc_percent": "54.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-01-24",
        "total_gene_count": "3584",
        "protein_coding_gene_count": "3465",
        "non_coding_gene_count": "73",
        "pubmed_id": "36070752"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-09-12",
    "dateModified": "2022-09-12",
    "datePublished": "2022-09-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Anaerotruncus colihominis"
        ],
        "sample_taxid": [
            "169435"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.004 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3563916",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3563916",
        "N50 (bp)": "3563916",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "54.2",
        "Number of CDSs": "3575",
        "Average Protein Length": "290.4",
        "Coding Ratio (%)": "87.4",
        "Number of rRNAs": "10",
        "Number of tRNAs": "59",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Anaerotruncus colihominis",
                "strain": "strain=DSM 17241",
                "accession": "GCA_025146135.1",
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                "species_taxid": 169435,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1186,
                "total_fragments": 1187,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Anaerotruncus colihominis",
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                "accession": "GCA_000154565.1",
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                "species_taxid": 169435,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.985,
                "matched_fragments": 1166,
                "total_fragments": 1187,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Anaerotruncus massiliensis",
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                "accession": "GCA_900199635.1",
                "taxid": 1673720,
                "species_taxid": 1673720,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.606,
                "matched_fragments": 233,
                "total_fragments": 1187,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marasmitruncus massiliensis",
                "strain": "strain=Marseille-P3646",
                "accession": "GCA_900186535.1",
                "taxid": 1944642,
                "species_taxid": 1944642,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0224,
                "matched_fragments": 100,
                "total_fragments": 1187,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000154565.1",
                "gtdb_species": "s__Anaerotruncus colihominis",
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                "matched_fragments": 1166,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Anaerotruncus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.95",
                "min_intra_species_ani": "97.75",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 16,
                "status": "conclusive"
            },
            {
                "accession": "GCF_010206195.1",
                "gtdb_species": "s__Anaerotruncus colihominis_A",
                "ani": 90.0493,
                "matched_fragments": 805,
                "total_fragments": 1187,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Anaerotruncus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.98",
                "min_intra_species_ani": "98.75",
                "mean_intra_species_af": "0.89",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_014385085.1",
                "gtdb_species": "s__Anaerotruncus sp014385085",
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                "matched_fragments": 90,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Anaerotruncus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014385025.1",
                "gtdb_species": "s__Fimivivens sp014385025",
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                "matched_fragments": 71,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Fimivivens",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900199635.1",
                "gtdb_species": "s__Anaerotruncus massiliensis",
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                "matched_fragments": 232,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Anaerotruncus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.56",
                "min_intra_species_ani": "98.01",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_000403395.2",
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                "matched_fragments": 115,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Anaerotruncus",
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                "min_intra_species_ani": "98.36",
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                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_900078395.1",
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                "matched_fragments": 162,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Anaerotruncus",
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                "mean_intra_species_ani": "99.23",
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Anaerotruncus",
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                "mean_intra_species_ani": "98.01",
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Anaerotruncus",
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCA_018716105.1",
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                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "cell_length": 0.544,
        "doubling_h": null,
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        "coding_genes": null,
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        "gram_stain": 1.0,
        "sporulation": 0.0,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
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    "_genome_taxon": [
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        "colihominis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}