{ "type": "genome", "identifier": "GCF_025147765.1", "organism": "Blautia obeum ATCC 29174", "title": "Blautia obeum ATCC 29174", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Stanford University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025147765.1", "bioproject": "PRJNA224116", "biosample": "SAMN20222666", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "411459", "species_taxid": "40520", "organism_name": "Blautia obeum ATCC 29174", "infraspecific_name": "strain=ATCC 29174", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/12", "asm_name": "ASM2514776v1", "asm_submitter": "Stanford University", "gbrs_paired_asm": "GCA_025147765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/147/765/GCF_025147765.1_ASM2514776v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3649956", "genome_size_ungapped": "3649956", "gc_percent": "41.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025147765.1-RS_2024_04_07", "annotation_date": "2024-04-07", "total_gene_count": "3503", "protein_coding_gene_count": "3360", "non_coding_gene_count": "78", "pubmed_id": "36070752" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-12", "dateModified": "2022-09-12", "datePublished": "2022-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Blautia obeum ATCC 29174" ], "sample_taxid": [ "411459" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.024 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3649956", "Number of Sequences": "1", "Longest Sequences (bp)": "3649956", "N50 (bp)": "3649956", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.6", "Number of CDSs": "3463", "Average Protein Length": "313.1", "Coding Ratio (%)": "89.1", "Number of rRNAs": "18", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Blautia obeum", "strain": "strain=ATCC 29174", "accession": "GCA_025147765.1", "taxid": 40520, "species_taxid": 40520, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1216, "total_fragments": 1216, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Blautia obeum", "strain": "strain=ATCC 29174", "accession": "GCA_000153905.1", "taxid": 40520, "species_taxid": 40520, "relation_to_type": "type", "validated": true, "ani": 99.9569, "matched_fragments": 1180, "total_fragments": 1216, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Blautia intestinalis", "strain": "strain=27-44", "accession": "GCA_014297355.1", "taxid": 2763028, "species_taxid": 2763028, "relation_to_type": "type", "validated": true, "ani": 84.6414, "matched_fragments": 719, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia massiliensis", "strain": "strain=GD9", "accession": "GCA_001487165.1", "taxid": 1737424, "species_taxid": 1737424, "relation_to_type": "type", "validated": true, "ani": 83.359, "matched_fragments": 404, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia luti", "strain": "strain=DSM 14534", "accession": "GCA_009707925.1", "taxid": 89014, "species_taxid": 89014, "relation_to_type": "suspected-type", "validated": true, "ani": 82.9096, "matched_fragments": 395, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia wexlerae", "strain": "strain=DSM 19850", "accession": "GCA_025148125.1", "taxid": 418240, "species_taxid": 418240, "relation_to_type": "suspected-type", "validated": true, "ani": 81.6842, "matched_fragments": 391, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Coprococcus comes", "strain": "strain=ATCC 27758", "accession": "GCA_025149785.1", "taxid": 410072, "species_taxid": 410072, "relation_to_type": "type", "validated": true, "ani": 81.6333, "matched_fragments": 177, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia wexlerae", "strain": "strain=DSM 19850", "accession": "GCA_000484655.1", "taxid": 418240, "species_taxid": 418240, "relation_to_type": "suspected-type", "validated": true, "ani": 81.4763, "matched_fragments": 372, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jingyaoa shaoxingensis", "strain": "strain=NSJ-46", "accession": "GCA_014385005.1", "taxid": 2763671, "species_taxid": 2763671, "relation_to_type": "type", "validated": true, "ani": 81.2967, "matched_fragments": 196, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hominisplanchenecus faecis", "strain": "strain=CLA-AA-H246", "accession": "GCA_020687205.1", "taxid": 2885351, "species_taxid": 2885351, "relation_to_type": "type", "validated": true, "ani": 81.2642, "matched_fragments": 176, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia caecimuris", "strain": "strain=DSM 29492", "accession": "GCA_024622975.1", "taxid": 1796615, 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"cell_length": 0.052, "doubling_h": 0.255, "growth_tmp": 37.0, "optimum_tmp": 40.0, "optimum_ph": 6.6, "genome_size": 3724295.25, "gc_content": 41.675, "coding_genes": 3155.0, "rRNA16S_genes": 5.0, "tRNA_genes": 65.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Blautia", "obeum", "ATCC", "29174" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }