# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_4	LOCUS_00040	sequence1:3297..3992(-)	frameshift		4165	WP_100190734.1	IS3 family transposase	95.2	42.0	41.4
MGA_35	LOCUS_00350	sequence1:42157..42600(-)	partial			WP_000090697.1	S24 family peptidase	87.1	50.0	51.1
MGA_68	LOCUS_00680	sequence1:57968..58804(+)	frameshift		57938	WP_010905714.1	phage major capsid protein	98.6	69.5	46.4
MGA_78	LOCUS_00780	sequence1:65209..67290(+)	partial			WP_011674637.1	collagen-like protein	52.4	29.2	28.1
MGA_83	LOCUS_00830	sequence1:70306..71286(+)	partial			WP_000350519.1	N-acetylmuramoyl-L-alanine amidase family protein	53.7	56.9	49.2
MGA_96	LOCUS_00960	sequence1:81932..82522(+)	partial			WP_011229253.1	TetR/AcrR family transcriptional regulator	71.9	72.3	26.0
MGA_118	LOCUS_01180	sequence1:103963..104469(+)	partial			WP_011038290.1	isoprenylcysteine carboxylmethyltransferase family protein	52.4	52.4	37.5
MGA_176	LOCUS_01740	sequence1:163478..163816(+)	internal_stop_codon	163814..163816(+)		WP_002263573.1	IS3 family transposase	100.0	40.3	51.3
MGA_177	LOCUS_01750	sequence1:163862..164113(+)	frameshift,internal_stop_codon	163814..163816(+)	164101,164239	WP_211260004.1	IS3 family transposase	90.4	16.5	61.3
MGA_178	LOCUS_01760	sequence1:164122..164283(+)	frameshift		164104,164239	WP_128834060.1	IS3-like element ISSmu1 family transposase	73.6	8.7	59.0
MGA_204	LOCUS_02020	sequence1:188689..190020(+)	partial			WP_003700513.1	acyltransferase family protein	98.4	72.3	30.2
MGA_206	LOCUS_02040	sequence1:190299..190529(+)	internal_stop_codon	190296..190298(+)		WP_000687513.1	GntR family transcriptional regulator	98.7	59.5	40.0
MGA_243	LOCUS_02410	sequence1:226870..228252(+)	partial			WP_015039059.1	nucleotidyltransferase	71.3	71.6	29.0
MGA_248	LOCUS_02460	sequence1:231992..232156(-)	partial			WP_000301254.1	recombinase family protein	94.4	9.8	58.8
MGA_250	LOCUS_02480	sequence1:233436..233606(+)	partial			WP_000031832.1	recombinase family protein	85.7	8.6	72.9
MGA_290	LOCUS_02880	sequence1:268892..269497(+)	partial			WP_010975245.1	TetR/AcrR family transcriptional regulator	76.6	69.6	33.8
MGA_304	LOCUS_03020	sequence1:278845..283935(+)	partial			WP_000515824.1	beta-N-acetylglucosaminidase domain-containing protein	80.4	49.1	61.4
MGA_305	LOCUS_03030	sequence1:284141..285154(+)	partial			WP_002985324.1	DNase Mf2	59.6	78.6	55.2
MGA_402	LOCUS_04000	sequence1:363134..363754(+)	frameshift		363751	WP_002356508.1	ABC transporter ATP-binding protein	98.5	56.2	74.4
MGA_403	LOCUS_04010	sequence1:363747..364226(+)	frameshift		363751	WP_002356508.1	ABC transporter ATP-binding protein	96.2	42.4	79.1
MGA_413	LOCUS_04110	sequence1:376038..376922(+)	partial			WP_003567269.1	ABC transporter ATP-binding protein	69.7	71.9	41.9
MGA_417	LOCUS_04150	sequence1:381307..382086(+)	partial			WP_003231267.1	3D domain-containing protein	78.4	72.5	36.4
MGA_424	LOCUS_04220	sequence1:390895..391194(+)	partial			WP_002359714.1	YlbG family protein	74.7	63.8	50.0
MGA_450	LOCUS_04480	sequence1:417276..417920(+)	partial			WP_011104332.1	MmcQ/YjbR family DNA-binding protein	31.8	58.1	38.2
MGA_456	LOCUS_04540	sequence1:425963..426088(-)	internal_stop_codon	426185..426187(-)		WP_012775654.1	site-specific integrase	97.6	10.5	65.0
MGA_495	LOCUS_04930	sequence1:465828..467177(+)	partial			WP_015776381.1	N-acetylglucosamine/diacetylchitobiose ABC transporter substrate-binding protein	76.2	69.8	24.6
MGA_508	LOCUS_05060	sequence1:478390..478713(-)	partial			WP_000349604.1	GIY-YIG nuclease family protein	70.1	76.5	58.7
MGA_513	LOCUS_05110	sequence1:481842..482396(+)	frameshift		482390	WP_141741171.1	IS3 family transposase	98.9	37.8	27.0
MGA_514	LOCUS_05120	sequence1:482426..483226(+)	frameshift		482372	WP_211260004.1	IS3 family transposase	98.1	57.5	51.5
MGA_524	LOCUS_05220	sequence1:491095..496485(+)	partial			WP_000489015.1	YSIRK signal domain/LPXTG anchor domain surface protein	26.4	52.5	34.0
MGA_531	LOCUS_05290	sequence1:505294..506922(+)	partial			WP_004190216.1	Cna B-type domain-containing protein	74.2	66.5	41.2
MGA_543	LOCUS_05410	sequence1:519431..520483(-)	partial			WP_002681016.1	histidine kinase	63.7	61.9	38.0
MGA_562	LOCUS_05600	sequence1:543280..543654(+)	partial			WP_002355538.1	biofilm phosphatase Bph	96.8	67.8	76.7
MGA_589	LOCUS_05850	sequence1:574540..575031(-)	partial			WP_011459566.1	TlpA disulfide reductase family protein	85.9	70.9	30.5
MGA_631	LOCUS_06270	sequence1:617095..618192(+)	partial			WP_000612272.1	competence protein CoiA family protein	83.3	74.2	25.8
MGA_642	LOCUS_06380	sequence1:633631..633861(+)	partial			WP_000940742.1	DUF1146 family protein	69.7	67.9	41.5
MGA_646	LOCUS_06420	sequence1:638088..639257(+)	partial			WP_000238227.1	exonuclease SbcCD subunit D	78.1	73.4	36.5
MGA_654	LOCUS_06500	sequence1:646436..647236(-)	frameshift		647289	WP_211260004.1	IS3 family transposase	98.1	57.5	51.5
MGA_655	LOCUS_06510	sequence1:647266..647820(-)	frameshift		647271	WP_141741171.1	IS3 family transposase	98.9	37.8	27.0
MGA_659	LOCUS_06550	sequence1:652235..653035(-)	frameshift		653088	WP_211260004.1	IS3 family transposase	98.1	57.5	51.5
MGA_660	LOCUS_06560	sequence1:653065..653619(-)	frameshift		653070	WP_141741171.1	IS3 family transposase	98.9	37.8	27.0
MGA_689	LOCUS_06850	sequence1:687291..688418(+)	partial			WP_002289886.1	5-formyltetrahydrofolate cyclo-ligase	37.6	76.7	36.9
MGA_693	LOCUS_06890	sequence1:690607..692145(-)	partial			WP_003641582.1	helix-turn-helix domain-containing protein	18.4	19.3	40.4
MGA_694	LOCUS_06900	sequence1:692126..693796(-)	partial			WP_003243833.1	two-component system sensor histidine kinase YesM	49.6	46.8	26.9
MGA_700	LOCUS_06960	sequence1:700456..701112(-)	partial			WP_000732627.1	DUF6287 domain-containing protein	63.3	37.4	31.0
MGA_718	LOCUS_07140	sequence1:715615..716169(+)	frameshift		716163	WP_141741171.1	IS3 family transposase	98.9	37.8	27.0
MGA_719	LOCUS_07150	sequence1:716199..716999(+)	frameshift		716145	WP_211260004.1	IS3 family transposase	98.1	57.5	51.5
MGA_767	LOCUS_07630	sequence1:769567..770109(+)	partial			WP_002286745.1	dihydrolipoamide dehydrogenase	91.7	60.1	33.7
MGA_796	LOCUS_07920	sequence1:800127..803219(+)	partial			WP_011837563.1	Cna B-type domain-containing protein	88.6	60.7	36.0
MGA_797	LOCUS_07930	sequence1:803424..805631(+)	partial			WP_011836871.1	SHIRT domain-containing protein	73.7	67.5	48.0
MGA_803	LOCUS_07990	sequence1:811523..813313(+)	partial			WP_011837563.1	Cna B-type domain-containing protein	78.7	29.4	31.4
MGA_826	LOCUS_08220	sequence1:838525..840564(+)	partial			WP_136619324.1	sugar ABC transporter substrate-binding protein	45.9	80.0	25.5
MGA_850	LOCUS_08460	sequence1:863616..864005(+)	partial			WP_003564665.1	Asp23/Gls24 family envelope stress response protein	84.5	73.9	46.0
MGA_886	LOCUS_08820	sequence1:901112..902746(+)	partial			WP_078232918.1	Ltp family lipoprotein	51.8	24.0	30.7
MGA_910	LOCUS_09060	sequence1:928265..929269(+)	partial			WP_011836909.1	CPBP family intramembrane metalloprotease	65.9	66.4	30.8
MGA_919	LOCUS_09150	sequence1:936601..936915(-)	partial			WP_139343698.1	helix-turn-helix domain-containing protein	87.5	66.9	28.6
MGA_922	LOCUS_09180	sequence1:939099..939824(+)	partial			WP_011475832.1	IS3 family transposase	72.2	79.3	37.6
MGA_923	LOCUS_09190	sequence1:939860..940636(+)	frameshift		939767	WP_100190734.1	IS3 family transposase	95.7	47.1	42.9
MGA_940	LOCUS_09360	sequence1:959495..965011(+)	partial			WP_000682781.1	G5 domain-containing protein	20.6	11.8	37.3
MGA_945	LOCUS_09410	sequence1:968628..969494(+)	partial			WP_011475884.1	DNA-processing protein DprA	71.2	71.7	53.7
MGA_955	LOCUS_09510	sequence1:981884..983089(-)	partial			WP_124797038.1	putative glycoside hydrolase	81.3	69.0	34.1
MGA_960	LOCUS_09560	sequence1:985950..986558(-)	partial			WP_002263573.1	IS3 family transposase	99.5	72.3	84.6
MGA_961	LOCUS_09570	sequence1:986783..987298(-)	frameshift		986857	WP_140860145.1	IS3 family transposase	86.0	32.7	75.5
MGA_1037	LOCUS_10330	sequence1:1072127..1072531(-)	partial			WP_002358896.1	metal-dependent transcriptional regulator	97.0	58.6	52.3
MGA_1039	LOCUS_10350	sequence1:1075567..1076121(+)	frameshift		1076115	WP_141741171.1	IS3 family transposase	98.9	37.8	27.0
MGA_1040	LOCUS_10360	sequence1:1076151..1076951(+)	frameshift		1076097	WP_211260004.1	IS3 family transposase	98.1	57.5	51.5
MGA_1076	LOCUS_10720	sequence1:1113659..1115236(-)	partial			WP_011837269.1	SpaA isopeptide-forming pilin-related protein	73.7	25.7	37.1
MGA_1115	LOCUS_11110	sequence1:1158219..1158476(-)	partial			WP_099835063.1	IS3 family transposase	64.7	14.5	50.9
MGA_1123	LOCUS_11190	sequence1:1165387..1165830(+)	frameshift		1165378	WP_001178657.1	threonine/serine exporter family protein	89.1	32.0	34.1
MGA_1124	LOCUS_11200	sequence1:1166386..1167093(-)	partial			WP_010965264.1	alpha/beta hydrolase	72.3	69.4	28.8
MGA_1131	LOCUS_11270	sequence1:1173136..1173648(-)	frameshift		1173649	WP_000966715.1	beta-glucuronidase	99.4	28.0	66.3
MGA_1132	LOCUS_11280	sequence1:1173557..1174939(-)	frameshift		1173649	WP_000966715.1	beta-glucuronidase	93.5	71.1	56.5
MGA_1175	LOCUS_11710	sequence1:1219690..1220715(+)	partial			WP_012972567.1	choline binding-anchored murein hydrolase LytC	49.6	31.9	42.1
MGA_1176	LOCUS_11720	sequence1:1220875..1221783(+)	internal_stop_codon	1220713..1220715(+)		WP_001042503.1	N-acetylmuramoyl-L-alanine amidase family protein	55.3	55.9	39.9
MGA_1177	LOCUS_11730	sequence1:1221943..1223610(+)	partial			WP_120171861.1	GBS Bsp-like repeat-containing protein	34.6	17.8	45.6
MGA_1203	LOCUS_11990	sequence1:1249904..1253944(-)	partial			WP_002352221.1	cell surface antigen I/II	47.0	41.0	69.2
MGA_1210	LOCUS_12060	sequence1:1259345..1259494(+)	frameshift		1259480,1259333	WP_093649644.1	ISL3 family transposase	91.8	7.1	75.6
MGA_1211	LOCUS_12070	sequence1:1259491..1260069(+)	partial			WP_205010568.1	tyrosine-type recombinase/integrase	60.9	28.9	64.1
MGA_1219	LOCUS_12150	sequence1:1266406..1273116(-)	partial			WP_011836784.1	CshA/CshB family fibrillar adhesin-related protein	97.7	68.3	37.5
MGA_1227	LOCUS_12230	sequence1:1282071..1282805(-)	partial			WP_011017006.1	sugar phosphate nucleotidyltransferase	94.7	42.9	39.7
MGA_1272	LOCUS_12660	sequence1:1329703..1330755(-)	frameshift,internal_stop_codon	1330781..1330783(-)	1330750	WP_003245781.1	PTS mannose transporter subunit IIABC	98.6	53.2	41.4
MGA_1274	LOCUS_12680	sequence1:1331114..1331563(-)	partial			WP_003245781.1	PTS mannose transporter subunit IIABC	99.3	22.9	41.6
MGA_1308	LOCUS_13020	sequence1:1370962..1371231(-)	internal_stop_codon	1371247..1371249(-)		WP_003223285.1	peroxide-responsive transcriptional repressor PerR	98.9	60.7	59.1
MGA_1309	LOCUS_13030	sequence1:1371247..1371396(-)	internal_stop_codon	1371247..1371249(-)		WP_011460706.1	transcriptional repressor	75.5	25.7	67.6
MGA_1356	LOCUS_13500	sequence1:1410984..1411418(-)	partial			WP_002381831.1	YtxH domain-containing protein	100.0	71.8	35.4
MGA_1368	LOCUS_13620	sequence1:1421188..1421544(-)	partial			WP_003564013.1	cell division protein ZapA	55.9	81.5	43.9
MGA_1371	LOCUS_13650	sequence1:1423708..1425834(-)	partial			WP_000672613.1	pneumococcal-type histidine triad protein	79.8	43.3	24.9
MGA_1391	LOCUS_13850	sequence1:1450549..1451076(-)	frameshift		1451108	WP_002290973.1	response regulator transcription factor	100.0	76.8	68.6
MGA_1392	LOCUS_13860	sequence1:1451082..1451243(-)	frameshift		1451108	WP_011475802.1	response regulator transcription factor	75.5	17.5	80.0
MGA_1393	LOCUS_13870	sequence1:1451385..1452575(-)	partial			WP_000753855.1	choline-binding protein PcpA	60.1	31.6	43.7
MGA_1403	LOCUS_13970	sequence1:1461675..1462715(-)	partial			WP_002387690.1	LCP family protein	88.4	74.6	44.0
MGA_1404	LOCUS_13980	sequence1:1462737..1464086(-)	partial			WP_002295400.1	LCP family protein	65.9	73.8	42.2
MGA_1436	LOCUS_14300	sequence1:1497515..1500142(-)	partial			WP_002279588.1	YfhO family protein	46.1	41.7	49.1
MGA_1438	LOCUS_14320	sequence1:1501221..1501865(-)	partial			WP_000934381.1	TIGR01906 family membrane protein	71.0	76.8	44.1
MGA_1460	LOCUS_14540	sequence1:1520241..1520612(-)	partial			WP_002895529.1	PTS lactose/cellobiose transporter subunit IIA	67.5	75.5	38.6
MGA_1476	LOCUS_14700	sequence1:1535721..1536599(+)	partial			WP_003131689.1	cation diffusion facilitator family transporter	98.6	67.8	46.5
MGA_1483	LOCUS_14770	sequence1:1541389..1542084(-)	frameshift		1542257	WP_100190734.1	IS3 family transposase	95.2	42.0	41.4
MGA_1508	LOCUS_15020	sequence1:1565047..1568148(-)	partial			WP_011837269.1	SpaA isopeptide-forming pilin-related protein	97.4	66.0	60.8
MGA_1520	LOCUS_15140	sequence1:1577658..1577921(-)	partial			WP_001233826.1	hypothetical protein	97.7	56.6	38.4
MGA_1522	LOCUS_15160	sequence1:1578525..1578950(-)	partial			WP_001233826.1	hypothetical protein	72.3	67.8	35.0
MGA_1523	LOCUS_15170	sequence1:1579002..1579427(-)	partial			WP_001233826.1	hypothetical protein	72.3	67.8	45.6
MGA_1524	LOCUS_15180	sequence1:1579441..1579866(-)	frameshift		1579981	WP_001233826.1	hypothetical protein	73.0	68.4	43.3
MGA_1525	LOCUS_15190	sequence1:1579976..1580323(-)	frameshift		1579981	WP_001233826.1	hypothetical protein	66.1	50.7	41.6
MGA_1526	LOCUS_15200	sequence1:1580349..1580792(-)	partial			WP_001233826.1	hypothetical protein	63.9	62.5	36.8
MGA_1528	LOCUS_15220	sequence1:1581255..1581683(-)	partial			WP_001233826.1	hypothetical protein	66.2	62.5	38.9
MGA_1530	LOCUS_15240	sequence1:1582162..1582587(-)	partial			WP_001233826.1	hypothetical protein	72.3	67.8	40.8
MGA_1531	LOCUS_15250	sequence1:1582616..1583041(-)	partial			WP_001233826.1	hypothetical protein	72.3	67.8	39.8
MGA_1532	LOCUS_15260	sequence1:1583067..1583492(-)	partial			WP_001233826.1	hypothetical protein	72.3	67.8	43.7
MGA_1539	LOCUS_15330	sequence1:1587529..1588083(+)	frameshift		1588077	WP_141741171.1	IS3 family transposase	98.9	37.8	27.0
MGA_1540	LOCUS_15340	sequence1:1588113..1588913(+)	frameshift		1588059	WP_211260004.1	IS3 family transposase	98.1	57.5	51.5
MGA_1541	LOCUS_15350	sequence1:1588974..1589216(-)	frameshift		1589436,1589271	WP_023916573.1	CPBP family intramembrane metalloprotease	97.5	31.1	76.9
MGA_1555	LOCUS_15490	sequence1:1604360..1606585(-)	partial			WP_000672596.1	pneumococcal histidine triad protein PhtE	89.9	58.8	44.1
MGA_1571	LOCUS_15630	sequence1:1626265..1626801(-)	partial			WP_003727691.1	FMN-binding protein	91.0	53.2	41.7
MGA_1580	LOCUS_15720	sequence1:1636367..1638265(-)	partial			WP_000214765.1	AAA family ATPase	46.5	30.9	52.4
MGA_1583	LOCUS_15750	sequence1:1641292..1641696(+)	frameshift,internal_stop_codon	1641229..1641231(+)	1641621	WP_140860145.1	IS3 family transposase	82.1	24.5	78.2
MGA_1605	LOCUS_15970	sequence1:1664003..1664446(-)	partial			WP_003722746.1	septum formation initiator family protein	63.9	75.0	34.4
MGA_1643	LOCUS_16350	sequence1:1704908..1705423(-)	frameshift		1704982	WP_140860145.1	IS3 family transposase	86.0	32.7	74.8
MGA_1665	LOCUS_16570	sequence1:1728114..1728662(+)	partial			WP_011836587.1	EndoU domain-containing protein	68.7	21.4	78.4
MGA_1667	LOCUS_16590	sequence1:1729183..1729959(-)	frameshift		1730051	WP_100190734.1	IS3 family transposase	95.7	47.1	42.9
MGA_1668	LOCUS_16600	sequence1:1729995..1730720(-)	partial			WP_011475832.1	IS3 family transposase	72.2	79.3	37.6
MGA_1694	LOCUS_16860	sequence1:1757183..1757698(+)	frameshift		1757623	WP_140860145.1	IS3 family transposase	86.0	32.7	74.8
MGA_1697	LOCUS_16890	sequence1:1759122..1759313(-)	partial			WP_002665927.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	96.8	67.8	49.2
MGA_1699	LOCUS_16910	sequence1:1759698..1760102(+)	frameshift		1760027	WP_140860145.1	IS3 family transposase	82.1	24.5	81.8
MGA_1700	LOCUS_16920	sequence1:1760102..1760614(+)	frameshift		1760609,1760039	WP_120719018.1	IS3 family transposase	100.0	37.9	77.6
MGA_1701	LOCUS_16930	sequence1:1760718..1760936(+)	frameshift		1760611	WP_115283723.1	IS3 family transposase	100.0	16.0	88.9
MGA_1707	LOCUS_16990	sequence1:1768571..1769041(-)	frameshift		1768618	WP_105158881.1	replication initiator protein A	74.4	41.9	59.5
MGA_1710	LOCUS_17020	sequence1:1771147..1771380(-)	partial			WP_000103844.1	CopY/TcrY family copper transport repressor	79.2	41.2	91.8
MGA_1711	LOCUS_17030	sequence1:1771573..1771953(-)	frameshift		1771602	WP_011860793.1	relaxase/mobilization nuclease domain-containing protein	96.0	27.3	47.1
MGA_1741	LOCUS_17330	sequence1:1798462..1799232(+)	partial			WP_012775056.1	LD-carboxypeptidase LdcB/DacB	73.0	73.7	53.2
MGA_1745	LOCUS_17370	sequence1:1802737..1803447(-)	partial			WP_011836379.1	membrane protein	83.5	45.7	34.2
MGA_1825	LOCUS_18170	sequence1:1869098..1869511(-)	partial			WP_001233826.1	hypothetical protein	74.5	67.8	40.8
MGA_1831	LOCUS_18230	sequence1:1873066..1873395(-)	partial			WP_010964944.1	DUF4176 domain-containing protein	77.1	62.5	57.1
MGA_1854	LOCUS_18460	sequence1:1898700..1899770(-)	partial			WP_003020323.1	DUF2971 domain-containing protein	52.5	74.4	24.8
MGA_1866	LOCUS_18580	sequence1:1911878..1914568(-)	partial			WP_003406189.1	DEAD/DEAH box helicase family protein	63.7	62.8	27.1
MGA_1867	LOCUS_18590	sequence1:1914600..1915922(-)	partial			WP_164929927.1	alpha-L-fucosidase	88.9	69.6	42.0
MGA_1874	LOCUS_18660	sequence1:1921337..1922632(-)	partial			WP_002378718.1	glucosaminidase domain-containing protein	28.8	24.5	50.0
MGA_1886	LOCUS_18780	sequence1:1937466..1938593(+)	partial			WP_193905664.1	GTP-binding protein	54.4	61.8	41.2
MGA_1891	LOCUS_18830	sequence1:1943975..1944253(-)	partial			WP_002287745.1	thioredoxin family protein	82.6	65.0	51.3
MGA_1893	LOCUS_18850	sequence1:1945219..1945944(+)	partial			WP_011475832.1	IS3 family transposase	72.2	79.3	37.6
MGA_1894	LOCUS_18860	sequence1:1945980..1946756(+)	frameshift		1945887	WP_100190734.1	IS3 family transposase	95.7	47.1	42.9
MGA_1900	LOCUS_18920	sequence1:1952597..1953247(-)	partial			WP_002468207.1	type II CAAX endopeptidase family protein	53.7	46.4	37.0
MGA_1902	LOCUS_18940	sequence1:1954120..1955358(-)	partial			WP_002900707.1	Ig-like domain-containing protein	50.0	36.7	28.9
