{
    "type": "genome",
    "identifier": "GCF_025150565.1",
    "organism": "Granulicatella adiacens ATCC 49175",
    "title": "Granulicatella adiacens ATCC 49175",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Stanford University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_025150565.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN20222693",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "638301",
        "species_taxid": "46124",
        "organism_name": "Granulicatella adiacens ATCC 49175",
        "infraspecific_name": "strain=ATCC 49175",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/09/12",
        "asm_name": "ASM2515056v1",
        "asm_submitter": "Stanford University",
        "gbrs_paired_asm": "GCA_025150565.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/150/565/GCF_025150565.1_ASM2515056v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1965422",
        "genome_size_ungapped": "1965422",
        "gc_percent": "38.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-01-24",
        "total_gene_count": "1943",
        "protein_coding_gene_count": "1841",
        "non_coding_gene_count": "77",
        "pubmed_id": "36070752"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-09-12",
    "dateModified": "2022-09-12",
    "datePublished": "2022-09-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Granulicatella adiacens ATCC 49175"
        ],
        "sample_taxid": [
            "638301"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "0.553 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1965422",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "1965422",
        "N50 (bp)": "1965422",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "37.8",
        "Number of CDSs": "1900",
        "Average Protein Length": "302.9",
        "Coding Ratio (%)": "87.8",
        "Number of rRNAs": "15",
        "Number of tRNAs": "58",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Granulicatella adiacens",
                "strain": "strain=ATCC 49175",
                "accession": "GCA_025150565.1",
                "taxid": 46124,
                "species_taxid": 46124,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 653,
                "total_fragments": 655,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Granulicatella adiacens",
                "strain": "strain=FDAARGOS_1477",
                "accession": "GCA_019931005.1",
                "taxid": 46124,
                "species_taxid": 46124,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9989,
                "matched_fragments": 652,
                "total_fragments": 655,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Granulicatella adiacens",
                "strain": "strain=ATCC 49175",
                "accession": "GCA_000160675.1",
                "taxid": 46124,
                "species_taxid": 46124,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9356,
                "matched_fragments": 641,
                "total_fragments": 655,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Carnobacterium gallinarum",
                "strain": "strain=MT44",
                "accession": "GCA_000744375.1",
                "taxid": 2749,
                "species_taxid": 2749,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4152,
                "matched_fragments": 50,
                "total_fragments": 655,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Granulicatella balaenopterae",
                "strain": "strain=DSM 15827",
                "accession": "GCA_900111135.1",
                "taxid": 137733,
                "species_taxid": 137733,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9691,
                "matched_fragments": 90,
                "total_fragments": 655,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000160675.1",
                "gtdb_species": "s__Granulicatella adiacens",
                "ani": 99.9356,
                "matched_fragments": 641,
                "total_fragments": 655,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Granulicatella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.49",
                "min_intra_species_ani": "96.38",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 11,
                "status": "conclusive"
            },
            {
                "accession": "GCA_905371865.1",
                "gtdb_species": "s__Granulicatella sp905371865",
                "ani": 92.825,
                "matched_fragments": 324,
                "total_fragments": 655,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Granulicatella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900551535.1",
                "gtdb_species": "s__Granulicatella sp900551535",
                "ani": 88.4719,
                "matched_fragments": 330,
                "total_fragments": 655,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Granulicatella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001071995.1",
                "gtdb_species": "s__Granulicatella sp001071995",
                "ani": 88.3845,
                "matched_fragments": 454,
                "total_fragments": 655,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Granulicatella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001058355.1",
                "gtdb_species": "s__Granulicatella sp001058355",
                "ani": 88.0728,
                "matched_fragments": 324,
                "total_fragments": 655,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Granulicatella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.40",
                "min_intra_species_ani": "95.27",
                "mean_intra_species_af": "0.77",
                "min_intra_species_af": "0.71",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_018364485.1",
                "gtdb_species": "s__Granulicatella adiacens_A",
                "ani": 87.8202,
                "matched_fragments": 419,
                "total_fragments": 655,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Granulicatella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015264885.1",
                "gtdb_species": "s__Granulicatella sp015264885",
                "ani": 87.6299,
                "matched_fragments": 287,
                "total_fragments": 655,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Granulicatella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.15",
                "min_intra_species_ani": "95.15",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
        "cell_length": -0.398,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 1923088.0,
        "gc_content": 37.6,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Granulicatella",
        "adiacens",
        "ATCC",
        "49175"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}