{ "type": "genome", "identifier": "GCF_025150745.1", "organism": "Eubacterium ventriosum", "title": "Eubacterium ventriosum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Stanford University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025150745.1", "bioproject": "PRJNA224116", "biosample": "SAMN20222692", "wgs_master": "na", "refseq_category": "na", "taxid": "39496", "species_taxid": "39496", "organism_name": "Eubacterium ventriosum", "infraspecific_name": "strain=ATCC 27560", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/12", "asm_name": "ASM2515074v1", "asm_submitter": "Stanford University", "gbrs_paired_asm": "GCA_025150745.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/150/745/GCF_025150745.1_ASM2515074v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2856089", "genome_size_ungapped": "2856089", "gc_percent": "35.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-24", "total_gene_count": "2621", "protein_coding_gene_count": "2499", "non_coding_gene_count": "81", "pubmed_id": "36070752" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-12", "dateModified": "2022-09-12", "datePublished": "2022-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Eubacterium ventriosum" ], "sample_taxid": [ "39496" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.786 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2856089", "Number of Sequences": "1", "Longest Sequences (bp)": "2856089", "N50 (bp)": "2856089", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.9", "Number of CDSs": "2567", "Average Protein Length": "323.0", "Coding Ratio (%)": "87.1", "Number of rRNAs": "8", "Number of tRNAs": "65", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Eubacterium ventriosum", "strain": "strain=ATCC 27560", "accession": "GCA_025150745.1", "taxid": 39496, "species_taxid": 39496, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 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"status": "below_threshold" }, { "organism_name": "Lachnospira eligens", "strain": "strain=ATCC 27750", "accession": "GCA_000146185.1", "taxid": 39485, "species_taxid": 39485, "relation_to_type": "suspected-type", "validated": true, "ani": 79.2446, "matched_fragments": 94, "total_fragments": 952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jutongia hominis", "strain": "strain=BX3", "accession": "GCA_014384965.1", "taxid": 2763664, "species_taxid": 2763664, "relation_to_type": "type", "validated": true, "ani": 78.1892, "matched_fragments": 67, "total_fragments": 952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eubacterium uniforme", "strain": "strain=ATCC 35992", "accession": "GCA_900167115.1", "taxid": 39495, "species_taxid": 39495, "relation_to_type": "type", "validated": true, "ani": 78.0939, "matched_fragments": 108, "total_fragments": 952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900141825.1", "gtdb_species": "s__Pseudobutyrivibrio xylanivorans", "ani": 77.0341, "matched_fragments": 50, "total_fragments": 952, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Pseudobutyrivibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.097, "cell_length": 0.278, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 37.071, "optimum_ph": null, "genome_size": 2870245.0, "gc_content": 34.9, "coding_genes": 3227.555, "rRNA16S_genes": 6.0, "tRNA_genes": 59.583, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.5, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, 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