{
    "type": "genome",
    "identifier": "GCF_025151535.1",
    "organism": "Segatella copri DSM 18205",
    "title": "Segatella copri DSM 18205",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Stanford University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_025151535.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN20222705",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "537011",
        "species_taxid": "165179",
        "organism_name": "Segatella copri DSM 18205",
        "infraspecific_name": "strain=DSM 18205",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/09/12",
        "asm_name": "ASM2515153v1",
        "asm_submitter": "Stanford University",
        "gbrs_paired_asm": "GCA_025151535.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/151/535/GCF_025151535.1_ASM2515153v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3325514",
        "genome_size_ungapped": "3325514",
        "gc_percent": "45.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_025151535.1-RS_2024_07_29",
        "annotation_date": "2024-07-29",
        "total_gene_count": "2796",
        "protein_coding_gene_count": "2663",
        "non_coding_gene_count": "78",
        "pubmed_id": "36070752"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-09-12",
    "dateModified": "2022-09-12",
    "datePublished": "2022-09-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Segatella copri DSM 18205"
        ],
        "sample_taxid": [
            "537011"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "0.941 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3325514",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3325514",
        "N50 (bp)": "3325514",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "45.2",
        "Number of CDSs": "2680",
        "Average Protein Length": "350.6",
        "Coding Ratio (%)": "84.8",
        "Number of rRNAs": "15",
        "Number of tRNAs": "62",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Prevotella copri",
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                "relation_to_type": "suspected-type",
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            {
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            },
            {
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                "accession": "GCA_004535825.1",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella bryantii",
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                "accession": "GCA_022024235.1",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella fusca",
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                "accession": "GCA_018128145.1",
                "taxid": 589436,
                "species_taxid": 589436,
                "relation_to_type": "type",
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            },
            {
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                "accession": "GCA_001262015.1",
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            },
            {
                "organism_name": "Prevotella stercorea",
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            },
            {
                "organism_name": "Prevotella scopos",
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                "species_taxid": 589437,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 115,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Phocaeicola plebeius",
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                "status": "below_threshold"
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            {
                "organism_name": "Prevotella nigrescens",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Prevotella vespertina",
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                "relation_to_type": "type",
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                "matched_fragments": 85,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella illustrans",
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                "accession": "GCA_017426725.1",
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                "relation_to_type": "type",
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}