{ "type": "genome", "identifier": "GCF_025195085.2", "organism": "Vibrio intestinalis", "title": "Vibrio intestinalis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Third Institute of Oceanography, Ministry of Natural Resources", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025195085.2", "bioproject": "PRJNA224116", "biosample": "SAMN27393812", "wgs_master": "JANAVY000000000.2", "refseq_category": "reference genome", "taxid": "2933291", "species_taxid": "2933291", "organism_name": "Vibrio intestinalis", "infraspecific_name": "strain=YLB-11", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/04/13", "asm_name": "ASM2519508v2", "asm_submitter": "Third Institute of Oceanography, Ministry of Natural Resources", "gbrs_paired_asm": "GCA_025195085.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/195/085/GCF_025195085.2_ASM2519508v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4340292", "genome_size_ungapped": "4340092", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "30", "contig_count": "30", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025195085.2-RS_2024_06_17", "annotation_date": "2024-06-17", "total_gene_count": "3995", "protein_coding_gene_count": "3854", "non_coding_gene_count": "102", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-04-13", "dateModified": "2023-04-13", "datePublished": "2023-04-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio intestinalis" ], "sample_taxid": [ "2933291" ], "sample_host_organism": [ "Hippocampus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.240 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4340292", "Number of Sequences": "30", "Longest Sequences (bp)": "1001620", "N50 (bp)": "204399", "Gap Ratio (%)": "0.004608", "GCcontent (%)": "44.7", "Number of CDSs": "3901", "Average Protein Length": "324.9", "Coding Ratio (%)": "87.6", "Number of rRNAs": "5", "Number of tRNAs": "88", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio rhodolitus", "strain": "strain=G98", "accession": "GCA_003350325.1", "taxid": 2231649, "species_taxid": 2231649, "relation_to_type": 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"below_threshold" }, { "organism_name": "Vibrio tubiashii", "strain": "strain=ATCC 19109", "accession": "GCA_000222665.2", "taxid": 29498, "species_taxid": 29498, "relation_to_type": "suspected-type", "validated": true, "ani": 80.694, "matched_fragments": 513, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio panuliri", "strain": "strain=JCM 19500", "accession": "GCA_009938205.1", "taxid": 1381081, "species_taxid": 1381081, "relation_to_type": "type", "validated": true, "ani": 80.6695, "matched_fragments": 547, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio harveyi", "strain": "strain=FDAARGOS_109", "accession": "GCA_001471575.2", "taxid": 669, "species_taxid": 669, "relation_to_type": "type", "validated": true, "ani": 80.6344, "matched_fragments": 494, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio maerlii", "strain": "strain=G62", "accession": "GCA_003415655.1", "taxid": 2231648, "species_taxid": 2231648, "relation_to_type": "type", "validated": true, "ani": 80.6014, "matched_fragments": 369, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio renipiscarius", "strain": "strain=DCR 1-4-2", "accession": "GCA_000827885.1", "taxid": 1461322, "species_taxid": 1461322, "relation_to_type": "type", "validated": true, "ani": 80.5929, "matched_fragments": 523, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio harveyi", "strain": "strain=NCTC12970", "accession": "GCA_900460165.1", "taxid": 669, "species_taxid": 669, "relation_to_type": "type", "validated": true, "ani": 80.5668, "matched_fragments": 493, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio europaeus", "strain": "strain=PP-638", "accession": "GCA_001695575.1", "taxid": 300876, "species_taxid": 300876, "relation_to_type": "type", "validated": true, "ani": 80.5555, "matched_fragments": 540, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio marinisediminis", "strain": "strain=404", "accession": "GCA_014050145.1", "taxid": 2758441, "species_taxid": 2758441, "relation_to_type": "type", "validated": true, "ani": 80.5033, "matched_fragments": 557, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio harveyi", "strain": "strain=NBRC 15634", "accession": "GCA_001591145.1", "taxid": 669, "species_taxid": 669, "relation_to_type": "type", "validated": true, "ani": 80.4733, "matched_fragments": 475, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio harveyi", "strain": "strain=ATCC 14126", "accession": "GCA_001263135.1", "taxid": 669, "species_taxid": 669, "relation_to_type": "type", "validated": true, "ani": 80.4515, "matched_fragments": 484, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio fortis", "strain": "strain=LMG 21557", "accession": "GCA_024347475.1", "taxid": 212667, "species_taxid": 212667, "relation_to_type": "type", "validated": true, "ani": 80.3795, "matched_fragments": 445, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio campbellii", "strain": "strain=CAIM 519", "accession": "GCA_000334195.1", "taxid": 680, "species_taxid": 680, "relation_to_type": "type", "validated": true, "ani": 80.3536, "matched_fragments": 474, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio nereis", "strain": "strain=NBRC 15637", "accession": "GCA_001591105.1", "taxid": 693, "species_taxid": 693, "relation_to_type": "type", "validated": true, "ani": 80.3523, "matched_fragments": 459, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio nereis", "strain": "strain=DSM 19584", "accession": "GCA_001274805.1", "taxid": 693, "species_taxid": 693, "relation_to_type": "type", "validated": true, "ani": 80.2777, "matched_fragments": 462, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio pelagius", "strain": "strain=ATCC 25916", "accession": "GCA_024347575.1", "taxid": 28169, "species_taxid": 28169, "relation_to_type": "type", "validated": true, "ani": 80.2554, "matched_fragments": 425, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio chagasii", "strain": "strain=LMG 21353", "accession": "GCA_024347355.1", "taxid": 170679, "species_taxid": 170679, "relation_to_type": "suspected-type", "validated": true, "ani": 80.1444, "matched_fragments": 428, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio coralliirubri", "strain": "strain=DSM 27495", "accession": "GCA_024347375.1", "taxid": 1516159, "species_taxid": 1516159, "relation_to_type": "type", "validated": true, "ani": 79.9631, "matched_fragments": 445, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio sinensis", "strain": "strain=BEI233", "accession": "GCA_003605645.1", "taxid": 2302434, "species_taxid": 2302434, "relation_to_type": "type", "validated": true, "ani": 79.7771, "matched_fragments": 475, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio tasmaniensis", "strain": "strain=LMG 20012", "accession": "GCA_024347635.1", "taxid": 212663, "species_taxid": 212663, "relation_to_type": "suspected-type", "validated": true, "ani": 79.7666, "matched_fragments": 443, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ 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