{ "type": "genome", "identifier": "GCF_025215075.1", "organism": "Tenacibaculum haliotis", "title": "Tenacibaculum haliotis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Universidad Bernardo O`Higgigins", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025215075.1", "bioproject": "PRJNA224116", "biosample": "SAMN30712836", "wgs_master": "JAOBTH000000000.1", "refseq_category": "reference genome", "taxid": "1888914", "species_taxid": "1888914", "organism_name": "Tenacibaculum haliotis", "infraspecific_name": "strain=KCTC 52419", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/15", "asm_name": "ASM2521507v1", "asm_submitter": "Universidad Bernardo O`Higgigins", "gbrs_paired_asm": "GCA_025215075.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/215/075/GCF_025215075.1_ASM2521507v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2977857", "genome_size_ungapped": "2977555", "gc_percent": "30.500000", "replicon_count": "0", "scaffold_count": "29", "contig_count": "29", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025215075.1-RS_2024_09_28", "annotation_date": "2024-09-28", "total_gene_count": "2801", "protein_coding_gene_count": "2730", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-15", "dateModified": "2022-09-15", "datePublished": "2022-09-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Tenacibaculum haliotis" ], "sample_taxid": [ "1888914" ], "sample_host_organism": [ "Haliotis discus hannai" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.818 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2977857", "Number of Sequences": "29", "Longest Sequences (bp)": "486103", "N50 (bp)": "332448", "Gap Ratio (%)": "0.010377", "GCcontent (%)": "30.7", "Number of CDSs": "2709", "Average Protein Length": "326.4", "Coding Ratio (%)": "89.1", "Number of rRNAs": "6", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Tenacibaculum haliotis", "strain": "strain=KCTC 52419", "accession": "GCA_025215075.1", "taxid": 1888914, "species_taxid": 1888914, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 977, "total_fragments": 977, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Tenacibaculum ovolyticum", "strain": "strain=DSM 18103", "accession": "GCA_000430545.1", "taxid": 104270, "species_taxid": 104270, "relation_to_type": "type", "validated": true, "ani": 83.508, "matched_fragments": 701, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum finnmarkense", "strain": "strain=TNO006", "accession": "GCA_900239185.1", "taxid": 2781243, "species_taxid": 2781243, "relation_to_type": "type", "validated": true, "ani": 81.639, "matched_fragments": 567, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum finnmarkense", "strain": "strain=TNO010", "accession": "GCA_900239495.1", "taxid": 2781243, "species_taxid": 2781243, "relation_to_type": "type", "validated": true, "ani": 81.3958, "matched_fragments": 580, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum pelagium", "strain": "strain=S7007", "accession": "GCA_014062345.1", "taxid": 2759527, "species_taxid": 2759527, "relation_to_type": "type", "validated": true, "ani": 81.297, "matched_fragments": 584, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum aiptasiae", "strain": "strain=a4", "accession": "GCA_008806755.1", "taxid": 426481, "species_taxid": 426481, "relation_to_type": "type", "validated": true, "ani": 80.2795, "matched_fragments": 584, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum aquimarinum", "strain": "strain=K20-16", "accession": "GCA_022478115.1", "taxid": 2910675, "species_taxid": 2910675, "relation_to_type": "type", "validated": true, "ani": 79.8303, "matched_fragments": 454, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum discolor", "strain": "strain=DSM 18842", "accession": "GCA_003664185.1", "taxid": 361581, "species_taxid": 361581, "relation_to_type": "type", "validated": true, "ani": 79.7591, "matched_fragments": 530, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum mesophilum", "strain": "strain=DSM 13764", "accession": "GCA_009362255.1", "taxid": 104268, "species_taxid": 104268, "relation_to_type": "type", "validated": true, "ani": 79.654, "matched_fragments": 529, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum singaporense", "strain": "strain=DSM 106434", "accession": "GCA_003867015.1", "taxid": 2358479, "species_taxid": 2358479, "relation_to_type": "type", "validated": true, "ani": 79.6431, "matched_fragments": 545, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum todarodis", "strain": "strain=LPB0136", "accession": "GCA_001889045.1", "taxid": 1850252, "species_taxid": 1850252, "relation_to_type": "type", "validated": true, "ani": 79.5347, "matched_fragments": 472, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter butkevichii", "strain": "strain=KCTC 12100", "accession": "GCA_002954605.1", "taxid": 218490, "species_taxid": 218490, "relation_to_type": "type", "validated": true, "ani": 78.8624, "matched_fragments": 417, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter undariae", "strain": "strain=KCTC 42175", "accession": "GCA_024918935.1", "taxid": 1574269, "species_taxid": 1574269, "relation_to_type": "type", "validated": true, "ani": 78.7014, "matched_fragments": 403, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter septentrionalilitoris", "strain": "strain=ANORD1", "accession": "GCA_009832745.1", "taxid": 2494657, "species_taxid": 2494657, "relation_to_type": "type", "validated": true, "ani": 78.1703, "matched_fragments": 368, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001693415.1", "gtdb_species": "s__Tenacibaculum soleae", "ani": 86.421, "matched_fragments": 768, "total_fragments": 977, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000430545.1", "gtdb_species": "s__Tenacibaculum ovolyticum", "ani": 83.5176, "matched_fragments": 699, "total_fragments": 977, "gtdb_taxonomy": 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