{
    "type": "genome",
    "identifier": "GCF_025234635.1",
    "organism": "Exiguobacterium profundum",
    "title": "Exiguobacterium profundum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Anhui Normal University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_025234635.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN29987060",
        "wgs_master": "JANIEG000000000.1",
        "refseq_category": "na",
        "taxid": "307643",
        "species_taxid": "307643",
        "organism_name": "Exiguobacterium profundum",
        "infraspecific_name": "strain=10C",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/09/16",
        "asm_name": "ASM2523463v1",
        "asm_submitter": "Anhui Normal University",
        "gbrs_paired_asm": "GCA_025234635.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/234/635/GCF_025234635.1_ASM2523463v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2798025",
        "genome_size_ungapped": "2798025",
        "gc_percent": "48.000000",
        "replicon_count": "0",
        "scaffold_count": "128",
        "contig_count": "128",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_025234635.1-RS_2024_03_29",
        "annotation_date": "2024-03-29",
        "total_gene_count": "2948",
        "protein_coding_gene_count": "2885",
        "non_coding_gene_count": "23",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-09-16",
    "dateModified": "2022-09-16",
    "datePublished": "2022-09-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Exiguobacterium profundum"
        ],
        "sample_taxid": [
            "307643"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not collected"
        ],
        "sample_host_location_id": [],
        "data_size": "0.806 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2798025",
        "Number of Sequences": "128",
        "Longest Sequences (bp)": "134226",
        "N50 (bp)": "45288",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "48.1",
        "Number of CDSs": "2767",
        "Average Protein Length": "293.6",
        "Coding Ratio (%)": "87.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "16",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Exiguobacterium profundum",
                "strain": "strain=10C",
                "accession": "GCA_025234635.1",
                "taxid": 307643,
                "species_taxid": 307643,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 863,
                "total_fragments": 869,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Exiguobacterium marinum",
                "strain": "strain=DSM 16307",
                "accession": "GCA_000620845.1",
                "taxid": 273528,
                "species_taxid": 273528,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.2999,
                "matched_fragments": 753,
                "total_fragments": 869,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Exiguobacterium aestuarii",
                "strain": "strain=TF_16",
                "accession": "GCA_025234735.1",
                "taxid": 273527,
                "species_taxid": 273527,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.7658,
                "matched_fragments": 701,
                "total_fragments": 869,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Exiguobacterium qingdaonense",
                "strain": "strain=S82",
                "accession": "GCA_018617855.1",
                "taxid": 2751251,
                "species_taxid": 2751251,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.1197,
                "matched_fragments": 731,
                "total_fragments": 869,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Exiguobacterium algae",
                "strain": "strain=S126",
                "accession": "GCA_018617875.1",
                "taxid": 2751250,
                "species_taxid": 2751250,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.9265,
                "matched_fragments": 541,
                "total_fragments": 869,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Exiguobacterium chiriqhucha",
                "strain": "strain=RW-2",
                "accession": "GCA_000416965.1",
                "taxid": 1385984,
                "species_taxid": 1385984,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0686,
                "matched_fragments": 547,
                "total_fragments": 869,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Exiguobacterium aurantiacum",
                "strain": "strain=DSM 6208",
                "accession": "GCA_000702585.1",
                "taxid": 33987,
                "species_taxid": 33987,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9473,
                "matched_fragments": 518,
                "total_fragments": 869,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Exiguobacterium himgiriensis",
                "strain": "strain=K22_26",
                "accession": "GCA_025234715.1",
                "taxid": 384621,
                "species_taxid": 384621,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6381,
                "matched_fragments": 502,
                "total_fragments": 869,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001909285.1",
                "gtdb_species": "s__Exiguobacterium profundum_A",
                "ani": 98.6539,
                "matched_fragments": 849,
                "total_fragments": 869,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.55",
                "min_intra_species_ani": "95.32",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 29,
                "status": "conclusive"
            },
            {
                "accession": "GCA_902362975.1",
                "gtdb_species": "s__Exiguobacterium sp902362975",
                "ani": 94.5815,
                "matched_fragments": 731,
                "total_fragments": 869,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.52",
                "min_intra_species_ani": "95.12",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_018617395.1",
                "gtdb_species": "s__Exiguobacterium sp018617395",
                "ani": 90.1329,
                "matched_fragments": 806,
                "total_fragments": 869,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.92",
                "min_intra_species_ani": "96.72",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000620845.1",
                "gtdb_species": "s__Exiguobacterium marinum",
                "ani": 88.2999,
                "matched_fragments": 753,
                "total_fragments": 869,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.37",
                "min_intra_species_ani": "97.95",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCF_001908175.1",
                "gtdb_species": "s__Exiguobacterium sp001908175",
                "ani": 88.2314,
                "matched_fragments": 725,
                "total_fragments": 869,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.57",
                "min_intra_species_ani": "95.32",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_018617485.1",
                "gtdb_species": "s__Exiguobacterium sp018617485",
                "ani": 87.8238,
                "matched_fragments": 744,
                "total_fragments": 869,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.75",
                "min_intra_species_ani": "95.34",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_018617855.1",
                "gtdb_species": "s__Exiguobacterium sp018617855",
                "ani": 87.1187,
                "matched_fragments": 731,
                "total_fragments": 869,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.125,
        "cell_length": 0.778,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": 45.0,
        "optimum_ph": 7.0,
        "genome_size": 3136503.296,
        "gc_content": 45.862,
        "coding_genes": 2872.166,
        "rRNA16S_genes": 9.0,
        "tRNA_genes": 68.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 0.0,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.5,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.5,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Exiguobacterium",
        "profundum"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}