{ "type": "genome", "identifier": "GCF_025234655.1", "organism": "Exiguobacterium antarcticum", "title": "Exiguobacterium antarcticum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Anhui Normal University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025234655.1", "bioproject": "PRJNA224116", "biosample": "SAMN29987061", "wgs_master": "JANJYY000000000.1", "refseq_category": "na", "taxid": "132920", "species_taxid": "132920", "organism_name": "Exiguobacterium antarcticum", "infraspecific_name": "strain=DVS_3Y", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/16", "asm_name": "ASM2523465v1", "asm_submitter": "Anhui Normal University", "gbrs_paired_asm": "GCA_025234655.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/234/655/GCF_025234655.1_ASM2523465v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from synonym type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2862145", "genome_size_ungapped": "2861167", "gc_percent": "47.000000", "replicon_count": "0", "scaffold_count": "152", "contig_count": "152", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025234655.1-RS_2024_08_03", "annotation_date": "2024-08-03", "total_gene_count": "2996", "protein_coding_gene_count": "2919", "non_coding_gene_count": "26", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-16", "dateModified": "2022-09-16", "datePublished": "2022-09-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Exiguobacterium antarcticum" ], "sample_taxid": [ "132920" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica: McMurdo Dry Valleys" ], "sample_host_location_id": [], "data_size": "0.821 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2862145", "Number of Sequences": "152", "Longest Sequences (bp)": "200842", "N50 (bp)": "27366", "Gap Ratio (%)": "0.034170", "GCcontent (%)": "47.2", "Number of CDSs": "2855", "Average Protein Length": "290.2", "Coding Ratio (%)": "86.8", "Number of rRNAs": "0", "Number of tRNAs": "21", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Exiguobacterium undae", "strain": "strain=DSM 14481", "accession": "GCA_000620805.1", "taxid": 169177, "species_taxid": 169177, "relation_to_type": "type", "validated": true, "ani": 87.1063, "matched_fragments": 792, "total_fragments": 879, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium artemiae", "strain": "strain=9AN", "accession": "GCA_025234645.1", "taxid": 340145, "species_taxid": 340145, "relation_to_type": "type", "validated": true, "ani": 85.6254, "matched_fragments": 675, "total_fragments": 879, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium sibiricum", "strain": "strain=255-15", "accession": "GCA_000019905.1", "taxid": 332410, "species_taxid": 332410, "relation_to_type": "type", "validated": true, "ani": 85.473, "matched_fragments": 761, "total_fragments": 879, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium oxidotolerans", "strain": "strain=JCM 12280", "accession": "GCA_000702625.1", "taxid": 223958, "species_taxid": 223958, "relation_to_type": "type", "validated": true, "ani": 82.347, "matched_fragments": 597, "total_fragments": 879, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium enclense", "strain": "strain=NIO-1109", "accession": "GCA_900096925.1", "taxid": 1017277, "species_taxid": 1017277, "relation_to_type": "type", "validated": true, "ani": 80.9563, "matched_fragments": 501, "total_fragments": 879, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium enclense", "strain": "strain=NIO-1109", "accession": "GCA_001456895.1", "taxid": 1017277, "species_taxid": 1017277, "relation_to_type": "type", "validated": true, "ani": 80.9563, "matched_fragments": 501, "total_fragments": 879, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium acetylicum", "strain": "strain=DSM 20416", "accession": "GCA_000702605.1", "taxid": 41170, "species_taxid": 41170, "relation_to_type": "suspected-type", "validated": true, "ani": 80.9099, "matched_fragments": 509, "total_fragments": 879, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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