{ "type": "genome", "identifier": "GCF_025234665.1", "organism": "Exiguobacterium mexicanum", "title": "Exiguobacterium mexicanum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Anhui Normal University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025234665.1", "bioproject": "PRJNA224116", "biosample": "SAMN29987059", "wgs_master": "JANIEH000000000.1", "refseq_category": "na", "taxid": "340146", "species_taxid": "340146", "organism_name": "Exiguobacterium mexicanum", "infraspecific_name": "strain=8N", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/16", "asm_name": "ASM2523466v1", "asm_submitter": "Anhui Normal University", "gbrs_paired_asm": "GCA_025234665.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/234/665/GCF_025234665.1_ASM2523466v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2927785", "genome_size_ungapped": "2927785", "gc_percent": "52.500000", "replicon_count": "0", "scaffold_count": "139", "contig_count": "139", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025234665.1-RS_2024_09_29", "annotation_date": "2024-09-29", "total_gene_count": "3087", "protein_coding_gene_count": "3028", "non_coding_gene_count": "28", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-16", "dateModified": "2022-09-16", "datePublished": "2022-09-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Exiguobacterium mexicanum" ], "sample_taxid": [ "340146" ], "sample_host_organism": [ "brine shrimp" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], "sample_host_location_id": [], "data_size": "0.838 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2927785", "Number of Sequences": "139", "Longest Sequences (bp)": "143102", "N50 (bp)": "38517", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.3", "Number of CDSs": "2919", "Average Protein Length": "289.5", "Coding Ratio (%)": "86.6", "Number of rRNAs": "0", "Number of tRNAs": "21", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Exiguobacterium chiriqhucha", "strain": "strain=RW-2", "accession": "GCA_000416965.1", "taxid": 1385984, "species_taxid": 1385984, "relation_to_type": "type", "validated": true, "ani": 93.9003, "matched_fragments": 850, "total_fragments": 909, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium aurantiacum", "strain": "strain=DSM 6208", "accession": "GCA_000702585.1", "taxid": 33987, "species_taxid": 33987, "relation_to_type": "type", "validated": true, "ani": 84.5711, "matched_fragments": 720, "total_fragments": 909, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium aurantiacum", "strain": "strain=NCTC13163", "accession": "GCA_900450545.1", "taxid": 33987, "species_taxid": 33987, "relation_to_type": "type", "validated": true, "ani": 84.5625, "matched_fragments": 731, "total_fragments": 909, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium alkaliphilum", "strain": "strain=12/1", "accession": "GCA_000714435.1", "taxid": 1428684, "species_taxid": 1428684, "relation_to_type": "type", "validated": true, "ani": 84.5224, "matched_fragments": 721, "total_fragments": 909, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium himgiriensis", "strain": "strain=K22_26", "accession": "GCA_025234715.1", "taxid": 384621, "species_taxid": 384621, "relation_to_type": "type", "validated": true, "ani": 83.4456, "matched_fragments": 670, "total_fragments": 909, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium aestuarii", "strain": "strain=TF_16", "accession": "GCA_025234735.1", "taxid": 273527, "species_taxid": 273527, "relation_to_type": "type", "validated": true, "ani": 81.2709, "matched_fragments": 483, "total_fragments": 909, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium marinum", "strain": "strain=DSM 16307", "accession": "GCA_000620845.1", "taxid": 273528, "species_taxid": 273528, "relation_to_type": "type", "validated": true, "ani": 81.0763, "matched_fragments": 519, "total_fragments": 909, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium profundum", "strain": "strain=10C", "accession": "GCA_025234635.1", "taxid": 307643, "species_taxid": 307643, "relation_to_type": "type", "validated": true, "ani": 80.9923, "matched_fragments": 504, "total_fragments": 909, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium algae", "strain": "strain=S126", "accession": "GCA_018617875.1", "taxid": 2751250, "species_taxid": 2751250, "relation_to_type": "type", "validated": true, "ani": 80.7987, "matched_fragments": 499, "total_fragments": 909, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium qingdaonense", "strain": "strain=S82", "accession": "GCA_018617855.1", "taxid": 2751251, "species_taxid": 2751251, "relation_to_type": "type", "validated": true, "ani": 80.7294, "matched_fragments": 508, "total_fragments": 909, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { 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mexicanum", "ani": 90.4452, "matched_fragments": 748, "total_fragments": 909, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.16", "min_intra_species_ani": "96.68", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.87", "num_clustered_genomes": 17, "status": "-" }, { "accession": "GCF_003331145.1", "gtdb_species": "s__Exiguobacterium sp003331145", "ani": 89.8319, "matched_fragments": 759, "total_fragments": 909, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004336985.1", "gtdb_species": "s__Exiguobacterium sp004336985", "ani": 89.5032, 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