{ "type": "genome", "identifier": "GCF_025336485.1", "organism": "Pseudomonas citri", "title": "Pseudomonas citri", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Microbiology, Guangdong Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025336485.1", "bioproject": "PRJNA224116", "biosample": "SAMN30816094", "wgs_master": "JAODAB000000000.1", "refseq_category": "reference genome", "taxid": "2978349", "species_taxid": "2978349", "organism_name": "Pseudomonas citri", "infraspecific_name": "strain=OPS13-3", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/20", "asm_name": "ASM2533648v1", "asm_submitter": "Institute of Microbiology, Guangdong Academy of Sciences", "gbrs_paired_asm": "GCA_025336485.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/336/485/GCF_025336485.1_ASM2533648v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6236344", "genome_size_ungapped": "6236344", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "64", "contig_count": "64", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025336485.1-RS_2024_10_11", "annotation_date": "2024-10-11", "total_gene_count": "5555", "protein_coding_gene_count": "5383", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-20", "dateModified": "2022-09-20", "datePublished": "2022-09-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas citri" ], "sample_taxid": [ "2978349" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Conghua district, Guangzhou, Guangdong Province" ], "sample_host_location_id": [], "data_size": "1.749 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6236344", "Number of Sequences": "64", "Longest Sequences (bp)": "483885", "N50 (bp)": "188056", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.9", "Number of CDSs": "5423", "Average Protein Length": "337.1", "Coding Ratio (%)": "87.9", "Number of rRNAs": "2", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas brassicacearum subsp. brassicacearum", "strain": "strain=CCUG 51508", "accession": 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1548, "total_fragments": 2050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas corrugata", "strain": "strain=NCPPB2445", "accession": "GCA_001411965.1", "taxid": 47879, "species_taxid": 47879, "relation_to_type": "type", "validated": true, "ani": 86.9385, "matched_fragments": 1536, "total_fragments": 2050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas corrugata", "strain": "strain=NCPPB2445", "accession": "GCA_003699065.1", "taxid": 47879, "species_taxid": 47879, "relation_to_type": "type", "validated": true, "ani": 86.9213, "matched_fragments": 1514, "total_fragments": 2050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pharyngis", "strain": "strain=BML-PP036", "accession": "GCA_021602345.1", "taxid": 2892333, "species_taxid": 2892333, "relation_to_type": "type", "validated": true, "ani": 84.2502, "matched_fragments": 1211, "total_fragments": 2050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sputi", "strain": "strain=BML-PP014", "accession": "GCA_021603585.1", "taxid": 2892325, "species_taxid": 2892325, "relation_to_type": "type", "validated": true, "ani": 84.0991, "matched_fragments": 1208, "total_fragments": 2050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lurida", "strain": "strain=LMG 21995", "accession": "GCA_002563895.1", "taxid": 244566, "species_taxid": 244566, "relation_to_type": "type", "validated": true, "ani": 83.1206, "matched_fragments": 1090, "total_fragments": 2050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas brassicae", "strain": "strain=MAFF 212427", "accession": "GCA_010671725.1", "taxid": 2708063, "species_taxid": 2708063, "relation_to_type": "type", "validated": true, "ani": 82.187, "matched_fragments": 808, "total_fragments": 2050, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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