{
    "type": "genome",
    "identifier": "GCF_025345565.1",
    "organism": "Thalassolituus hydrocarboniclasticus",
    "title": "Thalassolituus hydrocarboniclasticus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Third Institute of Oceanography, Ministry of Natural Resources, P.R.China",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_025345565.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN15097743",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2742796",
        "species_taxid": "2742796",
        "organism_name": "Thalassolituus hydrocarboniclasticus",
        "infraspecific_name": "strain=alknpb1M-1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/09/21",
        "asm_name": "ASM2534556v1",
        "asm_submitter": "Third Institute of Oceanography, Ministry of Natural Resources, P.R.China",
        "gbrs_paired_asm": "GCA_025345565.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/345/565/GCF_025345565.1_ASM2534556v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4067951",
        "genome_size_ungapped": "4067951",
        "gc_percent": "53.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_025345565.1-RS_2024_07_15",
        "annotation_date": "2024-07-15",
        "total_gene_count": "3660",
        "protein_coding_gene_count": "3586",
        "non_coding_gene_count": "70",
        "pubmed_id": "36605514"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-09-21",
    "dateModified": "2022-09-21",
    "datePublished": "2022-09-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thalassolituus hydrocarboniclasticus"
        ],
        "sample_taxid": [
            "2742796"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: South China Sea"
        ],
        "sample_host_location_id": [],
        "data_size": "1.144 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4067951",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "4067951",
        "N50 (bp)": "4067951",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "53.4",
        "Number of CDSs": "3617",
        "Average Protein Length": "335.5",
        "Coding Ratio (%)": "89.5",
        "Number of rRNAs": "12",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Thalassolituus marinus",
                "strain": "strain=IMCC1826",
                "accession": "GCA_020320395.1",
                "taxid": 671053,
                "species_taxid": 671053,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7323,
                "matched_fragments": 572,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thalassolituus oleivorans",
                "strain": "strain=MIL-1",
                "accession": "GCA_000355675.1",
                "taxid": 187493,
                "species_taxid": 187493,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4853,
                "matched_fragments": 221,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oleibacter marinus",
                "strain": "strain=DSM 24913",
                "accession": "GCA_900156675.1",
                "taxid": 484498,
                "species_taxid": 484498,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3708,
                "matched_fragments": 228,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanobacter kriegii",
                "strain": "strain=DSM 6294",
                "accession": "GCA_000422845.1",
                "taxid": 64972,
                "species_taxid": 64972,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3661,
                "matched_fragments": 282,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanobacter mangrovi",
                "strain": "strain=SM2-42",
                "accession": "GCA_019740315.1",
                "taxid": 2862510,
                "species_taxid": 2862510,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2593,
                "matched_fragments": 287,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudocitrobacter corydidari",
                "strain": "",
                "accession": "GCA_021172065.1",
                "taxid": 2891570,
                "species_taxid": 2891570,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0025,
                "matched_fragments": 59,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter hormaechei",
                "strain": "strain=FDAARGOS 1433",
                "accession": "GCA_019048245.1",
                "taxid": 158836,
                "species_taxid": 158836,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.8137,
                "matched_fragments": 68,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacterioplanes sanyensis",
                "strain": "strain=KCTC 32220",
                "accession": "GCA_014652515.1",
                "taxid": 1249553,
                "species_taxid": 1249553,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4959,
                "matched_fragments": 254,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stutzerimonas degradans",
                "strain": "strain=FDAARGOS_876",
                "accession": "GCA_016028635.1",
                "taxid": 2968968,
                "species_taxid": 2968968,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.6919,
                "matched_fragments": 80,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinobacterium arenosum",
                "strain": "strain=CAU 1594",
                "accession": "GCA_019795155.1",
                "taxid": 2862496,
                "species_taxid": 2862496,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5804,
                "matched_fragments": 94,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halopseudomonas oceani",
                "strain": "strain=CGMCC 1.15195",
                "accession": "GCA_014641295.1",
                "taxid": 1708783,
                "species_taxid": 1708783,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5248,
                "matched_fragments": 90,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter wuhouensis",
                "strain": "strain=WCHEW120002",
                "accession": "GCA_004331265.1",
                "taxid": 2529381,
                "species_taxid": 2529381,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5083,
                "matched_fragments": 52,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halopseudomonas oceani",
                "strain": "strain=DSM 100277",
                "accession": "GCA_002903165.1",
                "taxid": 1708783,
                "species_taxid": 1708783,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4276,
                "matched_fragments": 91,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinobacterium halophilum",
                "strain": "strain=DSM 17586",
                "accession": "GCA_003014615.1",
                "taxid": 267374,
                "species_taxid": 267374,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4192,
                "matched_fragments": 91,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinobacterium litorale",
                "strain": "strain=DSM 23545",
                "accession": "GCA_000428985.1",
                "taxid": 404770,
                "species_taxid": 404770,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4169,
                "matched_fragments": 71,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinobacter shengliensis subsp. alexandrii",
                "strain": "strain=LZ-6",
                "accession": "GCA_005871095.1",
                "taxid": 2570350,
                "species_taxid": 1389223,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1519,
                "matched_fragments": 84,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinobacter daepoensis",
                "strain": "strain=DSM 16072",
                "accession": "GCA_000421165.1",
                "taxid": 262077,
                "species_taxid": 262077,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9987,
                "matched_fragments": 65,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinobacterium nitratireducens",
                "strain": "strain=CGMCC 1.7286",
                "accession": "GCA_014645375.1",
                "taxid": 518897,
                "species_taxid": 518897,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9526,
                "matched_fragments": 69,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_007785795.1",
                "gtdb_species": "s__UBA2009 sp002335285",
                "ani": 92.9082,
                "matched_fragments": 1203,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__DSM-6294;g__UBA2009",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.54",
                "min_intra_species_ani": "97.44",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_002733205.1",
                "gtdb_species": "s__UBA2009 sp002733205",
                "ani": 88.8545,
                "matched_fragments": 1018,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__DSM-6294;g__UBA2009",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.83",
                "min_intra_species_ani": "96.83",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016132445.1",
                "gtdb_species": "s__UBA2009 sp016132445",
                "ani": 80.0726,
                "matched_fragments": 557,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__DSM-6294;g__UBA2009",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.98",
                "min_intra_species_ani": "97.98",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002706025.1",
                "gtdb_species": "s__UBA2009 sp002706025",
                "ani": 79.438,
                "matched_fragments": 488,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__DSM-6294;g__UBA2009",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.78",
                "min_intra_species_ani": "97.86",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_002314145.1",
                "gtdb_species": "s__UBA2009 sp002314145",
                "ani": 78.9992,
                "matched_fragments": 490,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__DSM-6294;g__UBA2009",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_900156675.1",
                "gtdb_species": "s__Oleibacter marinus",
                "ani": 78.3694,
                "matched_fragments": 227,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__DSM-6294;g__Oleibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.96",
                "min_intra_species_ani": "98.96",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002724925.1",
                "gtdb_species": "s__Oleibacter sp002724925",
                "ani": 78.3574,
                "matched_fragments": 231,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__DSM-6294;g__Oleibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.64",
                "min_intra_species_ani": "97.85",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_000422845.1",
                "gtdb_species": "s__Oceanobacter kriegii",
                "ani": 78.3395,
                "matched_fragments": 284,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__DSM-6294;g__Oceanobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 25.0,
        "optimum_tmp": 20.25,
        "optimum_ph": 8.0,
        "genome_size": 3865874.333,
        "gc_content": 46.605,
        "coding_genes": 3479.0,
        "rRNA16S_genes": 3.75,
        "tRNA_genes": 49.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 1.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 1.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Thalassolituus",
        "hydrocarboniclasticus"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}