{ "type": "genome", "identifier": "GCF_025345615.1", "organism": "Mycobacterium deserti", "title": "Mycobacterium deserti", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Medicinal Biotechnology Chinese Academy of Medical Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025345615.1", "bioproject": "PRJNA224116", "biosample": "SAMN30822140", "wgs_master": "JAODWD000000000.1", "refseq_category": "reference genome", "taxid": "2978347", "species_taxid": "2978347", "organism_name": "Mycobacterium deserti", "infraspecific_name": "strain=CPCC 205710", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/21", "asm_name": "ASM2534561v1", "asm_submitter": "Institute of Medicinal Biotechnology Chinese Academy of Medical Sciences", "gbrs_paired_asm": "GCA_025345615.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/345/615/GCF_025345615.1_ASM2534561v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5632578", "genome_size_ungapped": "5632531", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "14", "contig_count": "14", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025345615.1-RS_2024_10_11", "annotation_date": "2024-10-11", "total_gene_count": "5594", "protein_coding_gene_count": "5463", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-21", "dateModified": "2022-09-21", "datePublished": "2022-09-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium deserti" ], "sample_taxid": [ "2978347" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Xinjiang" ], "sample_host_location_id": [], "data_size": "1.548 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5632578", "Number of Sequences": "14", "Longest Sequences (bp)": "1210185", "N50 (bp)": "1023639", "Gap Ratio (%)": "0.000834", "GCcontent (%)": "66.5", "Number of CDSs": "5563", "Average Protein Length": "314.1", "Coding Ratio (%)": "93.1", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycolicibacterium rutilum", "strain": "strain=DSM 45405", "accession": "GCA_900108565.1", "taxid": 370526, "species_taxid": 370526, 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"type", "validated": true, "ani": 81.4866, "matched_fragments": 1085, "total_fragments": 1872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium komanii", "strain": "strain=GPK 1020", "accession": "GCA_001050035.1", "taxid": 1566885, "species_taxid": 1566885, "relation_to_type": "type", "validated": true, "ani": 81.3795, "matched_fragments": 1117, "total_fragments": 1872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium phlei", "strain": "strain=DSM 43239 = CCUG 21000", "accession": "GCA_001582015.1", "taxid": 1771, "species_taxid": 1771, "relation_to_type": "type", "validated": true, "ani": 81.3493, "matched_fragments": 1083, "total_fragments": 1872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium phlei", "strain": "strain=CCUG 21000", "accession": "GCA_001583415.1", "taxid": 1771, "species_taxid": 1771, "relation_to_type": "type", "validated": true, "ani": 81.3476, "matched_fragments": 1079, "total_fragments": 1872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium phlei", "strain": "strain=CCUG 21000", "accession": "GCA_009192875.1", "taxid": 1771, "species_taxid": 1771, "relation_to_type": "type", "validated": true, "ani": 81.3255, "matched_fragments": 1082, "total_fragments": 1872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium neumannii", "strain": "strain=CECT 8766", "accession": "GCA_002245615.1", "taxid": 2048551, "species_taxid": 2048551, "relation_to_type": "type", "validated": true, "ani": 81.1378, "matched_fragments": 1088, "total_fragments": 1872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium lehmannii", "strain": "strain=CECT 8763", "accession": "GCA_002245535.1", "taxid": 2048550, "species_taxid": 2048550, "relation_to_type": "type", "validated": true, "ani": 81.091, "matched_fragments": 1049, "total_fragments": 1872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium pulveris", "strain": "strain=JCM 6370", "accession": "GCA_010725725.1", "taxid": 36813, "species_taxid": 36813, "relation_to_type": "type", "validated": true, "ani": 80.9514, "matched_fragments": 1102, "total_fragments": 1872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium moriokaense", "strain": "strain=JCM 6375", "accession": "GCA_010726085.1", "taxid": 39691, "species_taxid": 39691, "relation_to_type": "type", "validated": true, "ani": 80.8533, "matched_fragments": 1084, "total_fragments": 1872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium moriokaense", "strain": "strain=CIP105393", "accession": "GCA_002086395.1", "taxid": 39691, "species_taxid": 39691, "relation_to_type": "type", "validated": true, "ani": 80.8484, "matched_fragments": 1083, "total_fragments": 1872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium agri", "strain": "strain=CCUG37673", "accession": "GCA_002553505.1", "taxid": 36811, "species_taxid": 36811, "relation_to_type": "type", "validated": true, "ani": 80.3941, "matched_fragments": 985, "total_fragments": 1872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium agri", "strain": "strain=JCM 6377", "accession": "GCA_010722915.1", "taxid": 36811, "species_taxid": 36811, "relation_to_type": "type", "validated": true, "ani": 80.353, "matched_fragments": 1018, "total_fragments": 1872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium chubuense", "strain": "strain=NCTC10819", "accession": "GCA_900453455.1", "taxid": 1800, "species_taxid": 1800, "relation_to_type": "type", "validated": true, "ani": 80.3516, "matched_fragments": 960, "total_fragments": 1872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium chubuense", "strain": "strain=DSM 44219", "accession": "GCA_002086595.1", "taxid": 1800, "species_taxid": 1800, "relation_to_type": "type", "validated": true, "ani": 80.3224, "matched_fragments": 959, "total_fragments": 1872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium houstonense", "strain": "strain=type strain: ATCC 49403", "accession": "GCA_900078665.2", "taxid": 146021, "species_taxid": 146021, "relation_to_type": "type", "validated": true, "ani": 79.7008, "matched_fragments": 874, "total_fragments": 1872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium conceptionense", "strain": "strain=CCUG 50187", "accession": "GCA_002102065.1", "taxid": 451644, "species_taxid": 451644, "relation_to_type": "suspected-type", "validated": true, "ani": 79.469, "matched_fragments": 844, "total_fragments": 1872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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