{
    "type": "genome",
    "identifier": "GCF_025403405.1",
    "organism": "Frankia tisae",
    "title": "Frankia tisae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Leibniz Institute DSMZ German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_025403405.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN28795901",
        "wgs_master": "JANEZT000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2950104",
        "species_taxid": "2950104",
        "organism_name": "Frankia tisae",
        "infraspecific_name": "strain=Agncl-8",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/09/26",
        "asm_name": "ASM2540340v1",
        "asm_submitter": "Leibniz Institute DSMZ German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany",
        "gbrs_paired_asm": "GCA_025403405.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/403/405/GCF_025403405.1_ASM2540340v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7068637",
        "genome_size_ungapped": "7068637",
        "gc_percent": "71.500000",
        "replicon_count": "0",
        "scaffold_count": "882",
        "contig_count": "882",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_025403405.1-RS_2024_08_02",
        "annotation_date": "2024-08-02",
        "total_gene_count": "6452",
        "protein_coding_gene_count": "5939",
        "non_coding_gene_count": "54",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-09-26",
    "dateModified": "2022-09-26",
    "datePublished": "2022-09-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Frankia tisae"
        ],
        "sample_taxid": [
            "2950104"
        ],
        "sample_host_organism": [
            "Alnus glutinosa"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom: Newcastle upon Tyne"
        ],
        "sample_host_location_id": [],
        "data_size": "1.931 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.38,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
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    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7068637",
        "Number of Sequences": "882",
        "Longest Sequences (bp)": "78754",
        "N50 (bp)": "15138",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "71.5",
        "Number of CDSs": "5630",
        "Average Protein Length": "310.3",
        "Coding Ratio (%)": "74.2",
        "Number of rRNAs": "3",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Candidatus Frankia alpina",
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                "species_taxid": 2699483,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Frankia torreyi",
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                "taxid": 1856,
                "species_taxid": 1856,
                "relation_to_type": "type",
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                "ani": 90.5742,
                "matched_fragments": 1562,
                "total_fragments": 1959,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Frankia alni",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Frankia canadensis",
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                "taxid": 1836972,
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                "ani": 82.7063,
                "matched_fragments": 1108,
                "total_fragments": 1959,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Frankia casuarinae",
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                "taxid": 106370,
                "species_taxid": 106370,
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                "validated": true,
                "ani": 81.6702,
                "matched_fragments": 920,
                "total_fragments": 1959,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Frankia soli",
                "strain": "strain=NRRL B-16219",
                "accession": "GCA_001854695.1",
                "taxid": 2599596,
                "species_taxid": 2599596,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Frankia discariae",
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                "species_taxid": 365528,
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                "matched_fragments": 893,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Frankia elaeagni",
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                "ani": 79.171,
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            },
            {
                "organism_name": "Frankia irregularis",
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                "taxid": 795642,
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                "ani": 78.8267,
                "matched_fragments": 874,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Frankia inefficax",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Amycolatopsis azurea",
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                "status": "below_threshold"
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        ],
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        "gtdb_result": [
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                "accession": "GCF_902806485.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Frankiaceae;g__Frankia",
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                "mean_intra_species_ani": "N/A",
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}