{ "type": "genome", "identifier": "GCF_025447695.1", "organism": "Streptococcus danieliae", "title": "Streptococcus danieliae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "RWTH Aachen University Hospital", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025447695.1", "bioproject": "PRJNA224116", "biosample": "SAMN29593167", "wgs_master": "JAOBSU000000000.1", "refseq_category": "reference genome", "taxid": "747656", "species_taxid": "747656", "organism_name": "Streptococcus danieliae", "infraspecific_name": "strain=DSM 22233", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/27", "asm_name": "ASM2544769v1", "asm_submitter": "RWTH Aachen University Hospital", "gbrs_paired_asm": "GCA_025447695.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/447/695/GCF_025447695.1_ASM2544769v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1698092", "genome_size_ungapped": "1698092", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "193", "contig_count": "193", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025447695.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "1699", "protein_coding_gene_count": "1590", "non_coding_gene_count": "44", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-27", "dateModified": "2022-09-27", "datePublished": "2022-09-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus danieliae" ], "sample_taxid": [ "747656" ], "sample_host_organism": [ "Mus musculus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Freising" ], "sample_host_location_id": [], "data_size": "0.489 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1698092", "Number of Sequences": "193", "Longest Sequences (bp)": "35780", "N50 (bp)": "13673", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.6", "Number of CDSs": "1617", "Average Protein Length": "294.2", "Coding Ratio (%)": "84.0", "Number of rRNAs": "2", "Number of tRNAs": "34", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus danieliae", "strain": "strain=DSM 22233", "accession": "GCA_025447695.1", "taxid": 747656, "species_taxid": 747656, "relation_to_type": "type", "validated": true, "ani": 99.9999, "matched_fragments": 461, 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}, { "organism_name": "Streptococcus gwangjuense", "strain": "strain=ChDC B345", "accession": "GCA_003627155.1", "taxid": 1433513, "species_taxid": 1433513, "relation_to_type": "type", "validated": true, "ani": 78.9272, "matched_fragments": 65, "total_fragments": 469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus shenyangsis", "strain": "strain=D19", "accession": "GCA_006385785.1", "taxid": 2589786, "species_taxid": 2589786, "relation_to_type": "type", "validated": true, "ani": 78.9204, "matched_fragments": 66, "total_fragments": 469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus chosunense", "strain": "strain=ChDC B353", "accession": "GCA_003626515.1", "taxid": 2707003, "species_taxid": 2707003, "relation_to_type": "type", "validated": true, "ani": 78.8886, "matched_fragments": 64, "total_fragments": 469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus gordonii", "strain": "strain=FDAARGOS 1454", "accession": "GCA_019046945.1", "taxid": 1302, "species_taxid": 1302, "relation_to_type": "suspected-type", "validated": true, "ani": 78.7964, "matched_fragments": 63, "total_fragments": 469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus respiraculi", "strain": "strain=HTS25", "accession": "GCA_003595525.1", "taxid": 2021971, "species_taxid": 2021971, "relation_to_type": "type", "validated": true, "ani": 78.7761, "matched_fragments": 61, "total_fragments": 469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus gordonii", "strain": "strain=NCTC7865", "accession": "GCA_900475015.1", "taxid": 1302, "species_taxid": 1302, "relation_to_type": "suspected-type", "validated": true, "ani": 78.6146, "matched_fragments": 64, "total_fragments": 469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus gordonii", "strain": "strain=ATCC 10558", "accession": "GCA_001469295.1", "taxid": 1302, "species_taxid": 1302, "relation_to_type": "suspected-type", "validated": true, "ani": 78.5679, "matched_fragments": 62, "total_fragments": 469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasanguinis", "strain": "strain=ATCC 15912", "accession": "GCA_000164675.2", "taxid": 1318, "species_taxid": 1318, "relation_to_type": "suspected-type", "validated": true, "ani": 78.5574, "matched_fragments": 68, "total_fragments": 469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus downii", "strain": "strain=CECT 9732", "accession": "GCA_004353325.1", "taxid": 1968889, "species_taxid": 1968889, "relation_to_type": "type", "validated": true, "ani": 78.5282, "matched_fragments": 65, "total_fragments": 469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus symci", "strain": "strain=C17", "accession": "GCA_006385165.1", "taxid": 2588991, 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