{ "type": "genome", "identifier": "GCF_025449215.1", "organism": "Shewanella seohaensis", "title": "Shewanella seohaensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Fujian Agriculture and Forestry University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025449215.1", "bioproject": "PRJNA224116", "biosample": "SAMN30945948", "wgs_master": "na", "refseq_category": "na", "taxid": "755175", "species_taxid": "755175", "organism_name": "Shewanella seohaensis", "infraspecific_name": "strain=KCTC 23556", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/28", "asm_name": "ASM2544921v1", "asm_submitter": "Fujian Agriculture and Forestry University", "gbrs_paired_asm": "GCA_025449215.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/449/215/GCF_025449215.1_ASM2544921v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4751888", "genome_size_ungapped": "4751888", "gc_percent": "48.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025449215.1-RS_2024_10_11", "annotation_date": "2024-10-11", "total_gene_count": "4230", "protein_coding_gene_count": "3472", "non_coding_gene_count": "140", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-28", "dateModified": "2022-09-28", "datePublished": "2022-09-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Shewanella seohaensis" ], "sample_taxid": [ "755175" ], "sample_host_organism": [ "sediment" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.351 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4751888", "Number of Sequences": "1", "Longest Sequences (bp)": "4751888", "N50 (bp)": "4751888", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "48.2", "Number of CDSs": "4528", "Average Protein Length": "297.5", "Coding Ratio (%)": "85.0", "Number of rRNAs": "28", "Number of tRNAs": "104", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Shewanella seohaensis", "strain": "strain=KCTC 23556", "accession": "GCA_025449215.1", "taxid": 755175, "species_taxid": 755175, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1582, 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"below_threshold" }, { "organism_name": "Shewanella oneidensis", "strain": "strain=MR-1", "accession": "GCA_000146165.2", "taxid": 70863, "species_taxid": 70863, "relation_to_type": "type", "validated": true, "ani": 86.0735, "matched_fragments": 1257, "total_fragments": 1583, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella oneidensis", "strain": "strain=MR-1", "accession": "GCA_013267215.1", "taxid": 70863, "species_taxid": 70863, "relation_to_type": "type", "validated": true, "ani": 86.0505, "matched_fragments": 1279, "total_fragments": 1583, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella marisflavi", "strain": "strain=JCM 12192", "accession": "GCA_023283925.1", "taxid": 260364, "species_taxid": 260364, "relation_to_type": "type", "validated": true, "ani": 81.5401, "matched_fragments": 357, "total_fragments": 1583, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella profunda", "strain": "strain=DSM 15900", "accession": "GCA_023283765.1", "taxid": 254793, "species_taxid": 254793, "relation_to_type": "type", "validated": true, "ani": 81.2016, "matched_fragments": 899, "total_fragments": 1583, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella oncorhynchi", "strain": "strain=S-1", "accession": "GCA_012584455.1", "taxid": 2726434, "species_taxid": 2726434, "relation_to_type": "type", "validated": true, "ani": 81.1309, "matched_fragments": 987, "total_fragments": 1583, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella loihica", "strain": "strain=PV-4", "accession": "GCA_000016065.1", "taxid": 359303, "species_taxid": 359303, "relation_to_type": "type", "validated": true, "ani": 80.0894, "matched_fragments": 362, "total_fragments": 1583, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella glacialipiscicola", "strain": "strain=LMG 23744", "accession": "GCA_023283485.1", 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"96.32", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.87", "num_clustered_genomes": 4, "status": "inconclusive" }, { "accession": "GCF_000014665.1", "gtdb_species": "s__Shewanella sp000014665", "ani": 95.104, "matched_fragments": 1418, "total_fragments": 1583, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.13", "min_intra_species_ani": "97.13", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "inconclusive" }, { "accession": "GCF_000203935.1", "gtdb_species": "s__Shewanella sp000203935", "ani": 94.2376, "matched_fragments": 1449, "total_fragments": 1583, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.76", "min_intra_species_ani": "95.76", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000485795.1", "gtdb_species": "s__Shewanella decolorationis", "ani": 92.305, "matched_fragments": 1338, "total_fragments": 1583, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.60", "min_intra_species_ani": "97.51", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_014647135.1", "gtdb_species": "s__Shewanella xiamenensis", "ani": 89.1307, "matched_fragments": 1268, "total_fragments": 1583, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.56", "min_intra_species_ani": "97.34", 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